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13-0666-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3060020 [Map]; Strand: c
      • AT1G09480.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 13-0666-1 - 5-prime edge 
    GATACCAATT CTAAAGAAGA AAAAGAAAAG TGTAAGAAAG ATTCCAAAAT 
    CTCGAAATTG ATATGTTCAC AAATCACAAC AAAACTTAAG AACCTTTGTC 
    TCCCTGCATA GACCTTGGAT CGGAGAAGAA AGTCTCGTCC ACCACATCGC 
    TTGCCTCCAC AGGTGGCTGA CGAAAGAGAA CCGCAGCCGT GGATGATGTC 
    AGAATGACCC TTCTGACAGA GGGAGTTTCT TTGCATGTAT TAAGGACGTT 
    CATAGTACCC TTTAAGGCTG GATCAATCAG CTCAGTCTGA TAATTATTAA 
    AAAAAAAAAA CNCNCNCTTT TNGANAAGTT TTTTTNNGGG GNCAAANNCA 
    AAAAATTTTT TNAAAAAAAN GTTTNANTNA NGGGGTTTNN AAATTTTNNG 
    GGGGGGTTNT NGGTNTTTTT TTTTCCNANT TTTNCCCCTT GGATTTTTTT 
    TTTTTAAANG AAANNCTTAA AAAACTTTTA NTAACCATAN GGNTNTATTT 
    GNCCCTTTNA AANANNTTTA ANATGGGGGA AAAAANNTAA ACCGGGNGNA 
    ATNTNCAGCC NGGGGCGGGA ANNNCCGGGN CCCGTNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3060089 [Map]; Strand: c
      • AT1G09480.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 13-0666-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTG 
    GTATCCACTC TCCAAAATTT TGGCAGAGAA TGCAGCGTGG GAATTTGCCA 
    AAGACAACGG AATCGACATG GTCGTGTTGA ATCCAGGATT TATATTCGGA 
    CCACTCTTGC AACCAACTCT GAACTTTTCG GTAGAGCTAA TTGTGGATTT 
    CATAAATGGT AAGAATCCTT TCAATAGTAG ATTCTACAGG TTCGTGGACG 
    TAAGAGATGT TGCCTTAGCT CATATCAAAG CTCTGGAGAC TCCTTCAGCC 
    AATGGCAGAT ACATCATTGA TGGTCCAATT ATGAGTGTAA GTGACATTAT 
    AGATATTCTG CGGGAGCTAC TTCCAGACTT GTGTATTGCT GATACGTGAG 
    TTCTCTTTCC CGCTACCTTT ACTTATGAAG TCCATAAATT TAATGAAAGA 
    TTTTGAAAAA CTTACGTTCG ATTTTAATTT TTGTAGGAAT GAANAAAGTG 
    TGATGAATGA AATGTTATGC AAAGTGTGTG TGGAGAAAGT GAANAATTTG 
    GGAGTTGAGT TCACTCCAAT GAAATCGAGC CTTAGAGACA CTATTGTTAG 
    CCTCAAGGAG AAANTGTCTT TTATGATTCT GGTTCTTATA TTTATAACCT 
    ACTGNGTATT TTATATTTTT GNTAGTANAA CTAATTNAAG TGGTNTAAGC 
    NNGTTAGGNT CTTTAAGATC TANCCNTTTT ATAANNATNG ATNGNTNATN 
    NTTGGTTTAG GCTTAATTTG GCCCTANTNA ANATTNGGAT TCCNGATTNN 
    TANATAAAAA TNCT

AT1G09480.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary
similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09490.1); Has 11337 Blast hits to 11295 proteins in 1830 species: Archae - 188; Bacteria - 4702; Metazoa - 514; Fungi - 973; Plants - 2502; Viruses - 52; Other Eukaryotes - 2406 (source: NCBI BLink).
Link
InterPro Scan - TAIR