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Mutant Lines
13-0682-1

13-0682-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 1357685 [Map]; Strand: c
- AT1G04820.1 - [+] show detail - tubulin alpha-4 chain
  Distance: 0; Region: exon2 (CDS)

GCCAGATGCC GAGTGACAAG ACTGTTGGTG GAGGTGACGA TGCTTTCAAC 
ACCTTCTTCA GTGAAACCGG TGCAGGTAAG CACGTCCCAC GTGCTGTCTT 
TGTTGATCTT GAGCCAACTG TGATCGACGA GGTCAGGACT GGTACTTACC 
GTCAGCTTTT CCACCCTGAA CAACTCATCA GCGGTAAAGA AGATGCAGCT 
AACAATTTCG CCCGTGGTCA TTACACCATT GGGAAAGAGA TTGTTGACCT 
GTGCTTAGAC CGTATCAGAA AGCT

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 1357801 [Map]; Strand: c
  - AT1G04820.1 - [+] show detail - tubulin alpha-4 chain
    Distance: 0; Region: intron1 (CDS)
Flanking Genome Sequence: 13-0682-1 - 3-prime edge
```
CATCTGGCCA TCAGGCTGTA ACATTCCAGA TCCAAAACAT ATCAATACAA 
ACTCATACAG TATGCACTAA GCATATAGAA GCT
```

AT1G04820.1

Model type: Protein coding
Short Description: tubulin alpha-4 chain
Curator Summary: Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers.
Computational Description: tubulin alpha-4 chain (TUA4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cadmium ion, microtubule-based process, cellular response to gravity; LOCATED IN: tubulin complex, cytosol, cell wall, plasma membrane, chloroplast; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-2 chain (TAIR:AT1G50010.1); Has 22626 Blast hits to 22529 proteins in 4679 species: Archae - 4; Bacteria - 25; Metazoa - 4391; Fungi - 13400; Plants - 1532; Viruses - 0; Other Eukaryotes - 3274 (source: NCBI BLink).
Link: InterPro Scan - TAIR