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13-0694-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10920381 [Map]; Strand: c
      • AT4G20220.1 - [+] show detail - Reverse transcriptase (RNA-dependent DNA polymerase)
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-0694-1 - 5-prime edge 
    GNTANGANAG ANGGGNANNG ACANGGGCNC NNACNACAAN NGAACGCGGT 
    ATCTTCATCT GCTGNNANTT CAAGGANATC NNTGCNAATG ANGGATCACN 
    AANCANGGCN ANTTTGACCA CTCNTGCNTT ATAATGATAT AAATCTCGAT 
    TAAAATATAA TTATATTAGA TACTTAACGT AAATNATGNG TATCTTAATT 
    ACTNCATTAT TATTATTTTT NGAACAAGTT TNACTNATNA TTTTTCTATG 
    NAACTNATTA TCCGCTTCCT CTCTTTTTTA CTTGGGNGAT GGTCTCCACA 
    CCAAATNGAA NGGAGGAAGT TCAACTTGCT AATGTACANG GACCANGATC 
    ANCACAACCA TCCAGANATN GNCNCTTAAA CAAATCCTAA ACCTAAAGNG 
    AGCTGGTNNA TTGAAAAAGC AANCCCAATA NATANANTNT TAANCCAAAA 
    CATNACTCTA GNGGNAAGNC NTGGCAANAA CTATANTAAA NATTATACCA 
    CCTAGNACTA AAANAATTNN GGANAAACNA TTNTATTTCC ATTNANCGCN 
    TTCNNANANN NTTTCTNANA GTNTTNCNAT TAGGTNNGAG ANGTGATGGT 
    NGNATCCCNC CNAATTTTAN ACANTNTACC TNCNAAANNA GGGANCNATN 
    ACNTTNAANG GAAANTNANT TCNCCTAAAA NNNAANNNTA AACNTNNNGG 
    NAAAAGNGAN NNNGGGTATA AANNNGTNAC AAAGGNTTTC TCNNTTGANN 
    CNNNANGNAN TAAAGATGNC CAAANNNNAN CNNNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10920486 [Map]; Strand: c
      • AT4G20220.1 - [+] show detail - Reverse transcriptase (RNA-dependent DNA polymerase)
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-0694-1 - 3-prime edge 
    AACATAACAG AGACAAGGTC AAATGCAAAC TCGAGTCATA CCATACTGGT 
    TTACATTGTT AAATTGGCGA TAAATATTAC TGTCGAAATT ATCTTATATA 
    TCTTCAAGAG ATCGAGATAT ATAGAGACAG AACGAAGGAT CAAATTGACA 
    TGTCTGTTGT TGATGAAATT ATTGTAAACA TTCGCAACCT CATCAGTGAG 
    AGAGTTTATT TACCGGAAAT AAATTGGTCA GTGAACGAAG AGAAAGTTGA 
    GATCCAAATT TTAGTCCAAA AAGTGATGTG ATGTATCTAC TAATGATATG 
    AAATCCATTT TCACCATCAA ATTTTACACT GTCCGATAGC TCACTCCACC 
    AAAAACCCGT GCAGCTGTAC CTTTTATGTC ATCTATAACT TATAGACTAT 
    AACACAACAA GAACGTACCA AAGATTTTGG GAGCCAGAGC AATATAACTT 
    AAACAGAGAA GAAAATTACA ATTCATTGTT CTTTTTCCTG ATAAATCCTC 
    GGTTTCCTTT AAAATTTCTT AATAAAGATG TAAAGATTTG TTATCTCACA 
    ATCACTCGAT TCGTACTCGG CTCTTGTTTG TGAATGGATT GAACANCAGA 
    GAAACGTAAA GAATCGNTGA CACAAAGATT TAACGAGTTC ACGTTTCCTT 
    ACCGGAAACG CTACGTCTNG CCGGAGGGGT GCTNCGGAAA TCCACNAGNA 
    CCCTGGGATC NCTGTTTCTA CAACAGGNTC AAACNCAGAG CNNTNTCTCT 
    NTCNATNNNN TTT

AT4G20220.1

Model type
Protein coding
Short Description
Reverse transcriptase (RNA-dependent DNA polymerase)
Computational Description
Reverse transcriptase (RNA-dependent DNA polymerase); CONTAINS InterPro DOMAIN/s: Reverse transcriptase, RNA-dependent DNA polymerase (InterPro:IPR013103); Has 55 Blast hits to 55 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR