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13-0710-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 869890 [Map]; Strand: c
      • AT1G03475.1 - [+] show detail - Coproporphyrinogen III oxidase
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 13-0710-1 - 5-prime edge
    ACCGTGACGA GAGACGAGGA CTTGGAGGGA TATTCTTTGA TGATNTTANT 
    GACTATGATC AGGAAANGCT TCTGTCNTTT NCCACTGGTA AGGGACATGA
    TTGTCCTCAA TCTACAACAA ACGATTTATT TTAATTGGTC TAGTTTCTTG
    GTAGACTAAT TTAGCAATTG GTGTTTACAG AATGCGCAAA CTCAGTGGTG
    CCGGCTTATA TACCTATAGT AGAGAAAAGG AAAGACATGG AATTTACAGA
    GCAGCACAAG GNATGGNNAC AATTGCGACN ANGGCGANAT NTTTNAATTA
    ACAA

AT1G03475.1

Model type
Protein coding
Short Description
Coproporphyrinogen III oxidase
Curator Summary
Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection.
Computational Description
LESION INITIATION 2 (LIN2); FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: tetrapyrrole biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260), Coproporphyrinogen III oxidase, conserved site (InterPro:IPR018375); BEST Arabidopsis thaliana protein match is: Coproporphyrinogen III oxidase (TAIR:AT4G03205.1); Has 4884 Blast hits to 4875 proteins in 1228 species: Archae - 0; Bacteria - 2144; Metazoa - 115; Fungi - 160; Plants - 86; Viruses - 0; Other Eukaryotes - 2379 (source: NCBI BLink).
Link
InterPro Scan - TAIR