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13-0712-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2414457 [Map]; Strand: c
      • AT1G07795.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
      • AT1G07800.1 - [+] show detail - transposable element gene
        Distance: -584; Region: promoter
    Flanking Genome Sequence: 13-0712-1 - 5-prime edge 
    CCGTCCACGT GGCAGCCTGA GCGATGACCG GCCAACGGTC AGAGACACTC 
    CGTAGAAACG GCTCCATTAG CGATGGAAGA CGGTGATACA TCTTGATCAG 
    AAGAAATGGG GATTGTTTTA GCGTGGATCA AAAGAAATTA GGTGTTGGTT 
    TGCGAGGAAA CGAAAAGATT GTGAGATCGA TGAGCAAAAA CCAGAGCTTG 
    TTTGATTGGT GCGGTTTATG TGTTTGGAAA CGGAAATGAA AATGGAAAGG 
    CTGCTTCTTT GCACGTTTAA CTAACTACTC TTCTTTCCCA TACACACACA 
    GAGAGTTGTT AATTACGAAT TTACCCTTCC CTTTGAACTC TTCTCTTCTT 
    CTTTTGCCCT TCCGGGTCGT CTCCTTCCCC TTTGACACTC CCACGTTTTC 
    AGCAATATCA ATTTTTGTTT AATCGACGGC TGTATTAGTT GGTTGTTAAG 
    AAATTTCAGA CTCGTTCCTC CATAATTCAG ATATAGGAGG AGAACATAAA 
    CTATATTATA TGATTATGGA GTAATGACAG TGATTTATGC TTTATGTTGT 
    TCACCAAAAA CTATTCATTA AAATTAAGCG GGTTCACCTA AATCTGATGC 
    TTATAGCCTG CTTGTGGCAC AACGATAACG ATAGGTAATT CAACTACTAA 
    TCTTCAATTT TATCTATTTC AATGACTCCA ATCATATCAT AATTAGACTC 
    TGTTCGTTAT AAGAAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2414573 [Map]; Strand: c
      • AT1G07795.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
      • AT1G07800.1 - [+] show detail - transposable element gene
        Distance: -468; Region: promoter
    Flanking Genome Sequence: 13-0712-1 - 3-prime edge 
    GTGGACGGTG CTTCTAATGT TTACGGTGGC CGTCGCTTCG TTTGCTCCGG 
    AGATGGCTTT TGTGTCTACG GTGTCGTCTT CGTGCGGAGG AGGAGATGGT 
    TTCGTGAAGA TTCCGATGGA TTTTGCAGGG GAGAGTATAT GCNGTGCCGT 
    CTAATATGGT GAAGAGATCG CGTTTTGATT TGTTTGTGCC TTCGATTTTC 
    GCGGCGGTTA TGGTCACTGC TTCGGCTTGT TTGATCCGAT CATGTATTGG 
    CACGGAGAAT GTGGATGATT TTTAATAAAC ACTTGTAAAT TAATTAATAA 
    TCTTGTATTC AGTTACTACA TAACATCCAC CATTTTGTTA TTCCAAATCA 
    CGACATTATA TTAAGCTGCG TCGTANAATA GTTGACATTT GTCAGTTTTA 
    ACCCAACAAT TTGATCTGTT ATGTTATCCA CGACCCAAAA TCACAACTAA 
    ACCATTTGAC ATTCCGTTTT GCCATCGTCC GGTTTTAAAT CACCATCAAA 
    TTAGTAATTA GTCAAGTGAT CATGACAAAT GCCGAGAGAT ACAGGAGACA 
    TTTGTGTGAT TCTGAGGTTT GTCAGGTTTG CAAAGGGGGA GTGGAGACTA 
    TCTCGCATGT TCTTAGAGAC TGCCCTTCGA TGTCGGGAAT ATGGAGCANG 
    ATTGTTCCTA NGAGGAACAA CAAGCGTTCT TTACNAAGTC ATTATTTTGA 
    GTGGCCTCTT GANAATCTCT GTGAGCAGGT TAA

AT1G07795.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28725.1); Has 38 Blast hits to 38 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G07800.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative reverse transcriptase., blastp match of 24% identity and 5.3e-10 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR