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13-0728-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3018220 [Map]; Strand: c
      • AT1G09340.1 - [+] show detail - chloroplast RNA binding
        Distance: 0; Region: exon10 (3UTR)
    Flanking Genome Sequence: 13-0728-1 - 3-prime edge 
    AAGCTAGGGA CGATGAAGAA ACCGAGAAAG TAAGTACACG AGAAAGAGAC 
    GGTCTGGCTC TTGACTTAGG AACTTAGGAA TTTTGGTATC AATTCGATAT 
    CCTCTTTCTA AATCTGAACC GAACCAAAAT TACAACCATA CCGACTACCG 
    AGCTAATTAA ACTTTAGTTT TAAATGCGGG CCCCTTTGTA TCATATAGCC 
    CATTAACCGA TCGAACCGAA CCAAAAAATC GAATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3018104 [Map]; Strand: c
      • AT1G09340.1 - [+] show detail - chloroplast RNA binding
        Distance: 0; Region: exon10 (3UTR)
    Flanking Genome Sequence: 13-0728-1 - 5-prime edge 
    CCTANCTNGN CTTNTTTAGA GAANAGTCAG AACANAATCC GGACCNTAAC 
    ATACTGTGAG ANGACAATNA AGTTCANAAC GTTTAAGAGA ACCGGGTGAT 
    CAGAATCATA CAAGCCAAGA ATGANCAACA TCTTAGGATT TCGATTANTG 
    AAGAACAAGT NNCTNGCTCA GAATCATGTN GNNAGNGGTG AAATCCGNTT 
    CTTTCCGGAA TGTTCCGCGA CCGAAATCAA GGTTGTATGA GTCAGTGAGA 
    CCCTCCACTA AGTCGAACTC CGGTTTCCAT CCGAGGACAT GCTTTGCTTT 
    CTCCACCGAT GCAAAGAAAT GCTGCAAGAG AATATACATA TATCAAAATC 
    TCAACTTCTA AATTGGAATC GTTCATGTTG CAGCCTCGAT CATTAGAACG 
    TTGTGGTTTT TACCTGATCA CGGAAAGGGA ATGCCTTCTT CTTCCCAAAG 
    TCGAACTCTT TCGGGTTGTA ATGAACAATC TCTGGNTCCG GGAACCCACC 
    GGCCTGGGAG NGNGTGGAAA ACNTGAATAA GTNTACTCAN GCNNTGNTCC 
    NAAAGCTNNA NGNTGATATN TTTTTNCAAN NNGGGCNNCN CCCNGGNNGN 
    NCCTNNNNCG AANNTGGNTT NGNGGGGGCC NCGNNNNNGG CNNTNGANNA 
    GAATGGNCNT NTTNGCNAGN GAACAGNNCG GGGCCGGGGN NCCCNCNCGC 
    GCNNCNNNCN GNNNGGGGNG NNNNNANNNG

AT1G09340.1

Model type
Protein coding
Short Description
chloroplast RNA binding
Curator Summary
Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.
Computational Description
chloroplast RNA binding (CRB); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast stem-loop binding protein of 41 kDa (TAIR:AT3G63140.1); Has 5936 Blast hits to 5936 proteins in 1402 species: Archae - 366; Bacteria - 3891; Metazoa - 108; Fungi - 58; Plants - 234; Viruses - 3; Other Eukaryotes - 1276 (source: NCBI BLink).
Link
InterPro Scan - TAIR