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13-0740-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22743204 [Map]; Strand: w
      • AT3G61460.1 - [+] show detail - brassinosteroid-responsive RING-H2
        Distance: -920; Region: promoter
    Flanking Genome Sequence: 13-0740-1 - 3-prime edge 
    ANTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATAG 
    TTTTCTATAT ATATAACAAA GACAAAAGCA ATGAACTGGT TTATAGAAAT 
    AGTAATATTT TAGGTGATCC CTCGCATTAT TTGATATATA CACCTCGACT 
    GATGCCAACA TAGAATCACA AAACAAATAT CTAAACTTTG TTAAATAAAG 
    AAAAGAACCT AATACAGTAG TTAGCTACTT AGCTTATCAT ATGTAATTAC 
    AAAAGAATTT TATACTTTTC AAATACATTT TGTTGTTTTC CTATAACCAG 
    TATAAATGCT AATAGAGACA ACGCATGAGA CCTCTTTGAC GTGTGATTTA 
    CGGAATGAAG CTCAGCCATT TGATCTTACT TTACTACAAG ATTAGTTAAC 
    GATCTAGGAT CAAATTACCA TATACAATTG TGTTTTAAAA TAATGATAAT 
    TAGTGGTATA TTTTTTTGTT TGTTCTTATG AAAATGTCCT AATACCGAGA 
    ACGTAACCCT ATTTATCTAC TGCCTAGTGT AAATTTCACG TGTTAAATGA 
    CATTCAACGA ATCCCAAAAA TTAGAATTAA AAAACGTAAT TCCATTTATA 
    AAAAAATAGG ACGAATTAAT TCCTCAATCC ACATCAACCG CACGTACCAC 
    GTGTGCTGAT CGTCGTGCAA CTTGCAGATA CTTTTATTCC CAAAAAAAAA 
    AAACCATNTT TCNTNGGNAN NACCCCGGGN CCCNATTCAC CTNTTGGGGG 
    GGGAAAAACA AANTTNNCNA GNCCNACCTA ANTTTTTNCC NTTTNNACTT 
    TTTTANCCNN GGNGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22743255 [Map]; Strand: w
      • AT3G61460.1 - [+] show detail - brassinosteroid-responsive RING-H2
        Distance: -971; Region: promoter
    Flanking Genome Sequence: 13-0740-1 - 5-prime edge 
    CTTTGATAAA ACTAACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTCATC GCACTACGGT TTGGATTAAT TTCTTATTTT 
    GACTACAGTA ATATAGTTAG GATTGCTTCT AGTTTTGAAA AAGATGATAA 
    TATGTTTTGA GATCGGTACA ATGTTTAATT GAAATATATA TTTGATGATC 
    AAATTAAAGG CATTAGGTTG AGTAAAAACA TTACAAAAGC AAAAGTTCAA 
    AAAAAAATGA AGAAAGCAAA GAGAGACNAG AGAAGGGTGT GTGTGGGTCA 
    AGGAGGCTTT AAAGAGATGA TTAATAAAGA AAGAGGAATC AACCTTATCT 
    ATACCCCTCA CCCTCAATTT CGAAAATGAT AGATTATATA TATACATAAT 
    TAATAATTAT ATAAAAGTAN AAAAAAGTCT ATTGTTTAAC TGAGTGGNGG 
    ACTGGANAGA GGTATAGGAN ACAAGTCGTC GGNGGCAATG ATCCTTCCAC 
    CAACCGGCAA NGGTTCATGG CTCAACTATG ATCGGAGAAA TGTCGTTTTT 
    GCAATGAACA TATATGTTTG NGTTATCTAT AATCGNATTT TAAAATCAAG 
    NGGGCGNATA TATATACTCT AATACTTATA GNCATGNGGA AATTTTTTCA 
    TAAGATGTAC AACTTACTTA CNATGATTTA TTCAAACTTA NTAGGAATTN 
    TTTGGNTTCT TTACCCCATT ATAGTNGACN CNCTCAAAAT NNCCCGAGAT 
    AANAATAAAN NGGAGGTNNT TGGGAAANTT TATNANGGNG GGCCTTNTTT 
    NNANTNNCCC CCNGAATACC CN

AT3G61460.1

Model type
Protein coding
Short Description
brassinosteroid-responsive RING-H2
Curator Summary
Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide.
Computational Description
brassinosteroid-responsive RING-H2 (BRH1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to brassinosteroid stimulus, response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G63840.1); Has 6755 Blast hits to 6739 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 1714; Fungi - 535; Plants - 3593; Viruses - 29; Other Eukaryotes - 884 (source: NCBI BLink).
Link
InterPro Scan - TAIR