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13-0747-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 213027 [Map]; Strand: c
      • AT5G01540.1 - [+] show detail - lectin receptor kinase a4.1
        Distance: 0; Region: exon1 (CDS)
      • AT5G01542.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-0747-1 - 3-prime edge
    GTTGGAGATA GTGTGAATGT GAATCCAAAG CCTTTATTGC TTGAGCTTGA 
    AGGGATTATG ACAAAGACGA AAGACGTGCT GAAGGAACGA ATTGTGACGT
    TTGTGGAATT TCTATTAAGC AACCTCACCG GTTTGTGGTA GAAAGCTTGT
    ACCNGGTAAC ATTCGACTTT CGGTCAGTGA GTCTCAATAG TCCGTCGGGT
    TTGATCATCG CGGCTCCTTC AATCCGAATC TTCGATTGGT TTCCGTTAAA
    ACCTCGGAAA GCAAAATTTG TTGTTGTTCT CTGAGCTCGA ACATGGACGC
    TCAAAAACAG GAAAAGCT

AT5G01540.1

Model type
Protein coding
Short Description
lectin receptor kinase a4.1
Curator Summary
Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.
Computational Description
lectin receptor kinase a4.1 (LECRKA4.1); FUNCTIONS IN: kinase activity; INVOLVED IN: N-terminal protein myristoylation, abscisic acid mediated signaling pathway, response to abscisic acid stimulus, seed germination; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin receptor kinase a4.1 (TAIR:AT5G01550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01542.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G01540
Link
InterPro Scan - TAIR