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13-0753-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::low yield)
  • abnormal (PATO:0000460)
    (Seed yield::seed shape)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10345341 [Map]; Strand: w
      • AT1G29600.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 13-0753-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAC AGCTGAGACA AGGGTTTATA CGAATTTCTC 
    AGGAGAAAGA AGTGGGCCAG TTTCGTGATC ACCAAGACTC TAAAGAAGAC 
    GCGCAAGAGG TTCTGCTACA ACAGAGACCT AGAGATGTTG AGATGCNGGA 
    AGAGGGTAAA GAAACTAAGT TCTTACATAG TTTTCTTTGT TTGATTTTAA 
    CGTTTTCTTT TGAATTTTGA TTCTCAGTCT AGAAGTCCGG ATTTTAGAGC 
    GAGTTCATCG AGAGGAAGAG TTGAAAATAA ATGTCAAAGA CGCCATGGAA 
    AGGAGTTGGC CTTATTCAAG CGAGAGAGGG TAAAGAAAAT GAATTATGAC 
    TTGATTTTGT TCTTTGTTTT ATTTTACTGA CTTCAGTCAC TTAATGATCC 
    TGAGTCCTTT TGACTTAACT CGTTGCTTTT TCTTCAAACA AAATATGGTA 
    GGATCTTCAG AAACCGAGAC AAAGGAACAT CGAGAGGCAG AGGAGAGAAG 
    CTCAAGAGAA TCTGCAACTG CAACAGGAGT GGTTTCAGGT AAAGAAACTG 
    AACTGAGACC TACTTATGTT TATTTGTTGA TGATGCCAGA GAATCAAAAC 
    GTAGATGTTA AACAGACTCT GCAGGAACAG AGAAAGAGAA ACNTAAAGAA 
    GGCGAGAATC GAAGCTCGTT TGAACTTGAT CAGGTGTTTA GTTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10345296 [Map]; Strand: w
      • AT1G29600.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 13-0753-1 - 3-prime edge 
    GTCTCAGCAT AATACAAAGT AACGAAGAGA ATAAGTTCTT GTTCTGTTTC 
    CTTACCTTAT TCTCTGGCCA TGATCTTGAC TCTGTATTGT ACCTCCTCCC 
    TGAATCATTC CTTCTCAAAT CCGGGTTCTA CCCTGAGAGC CAAAACTTAA 
    AACACGTTAC ATCAAACTAA TATAGTCATG GCTTCTAACC CTGGAGAATA 
    AACTCGGTTT AAGTTATCAC ATTTGACAAT AAAACGTTGC TAAGACTAAT 
    ATAATATCCG CGGTGAAATT ACCTGAGGCA TAGGTAAACT ATCACCATCC 
    CTTTCCTTTG GGTGATTAAA TGGACAATTT GAGCCTCTCT TACAAGCTCC 
    TGCCTTAAAA AACTGCAACA AAATGCATAT AGAAGTTTGG AATT

AT1G29600.1

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT1G29570.1); Has 792 Blast hits to 313 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 9; Plants - 764; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR