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13-0754-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1874743 [Map]; Strand: c
      • AT1G06150.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -1025; Region: intergenic
      • AT1G06148.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 142; Region: intergenic
    Flanking Genome Sequence: 13-0754-1 - 5-prime edge 
    CGTTAAATGT ATTCTTGAAC TTGGGCTTCG TCCACAAAAA CATGCCAAAA 
    GAGAAATGAT ATTGTTGAAT AGTAAAAGTC ATACAACTTT CGGTTTCCTT 
    TTTCTCCTTC CCTCTTATCC TCTTGACAGT AAATCTACGC AAAAAATTGT 
    GTGTTATTAT ACATATAGAA AGAACAAAAG AAAGAACGAA AAGGAAAATG 
    GAATGTGCTC AAGTCCCAAA GGTCAAACAA AGAAGTGTGA AATTGAAAGC 
    GAAAGGTGAG GCTTCTTTCT TGATACACTT GTTTTGTTTG TTTGGCCAAT 
    GTTCATCATT CGCCCCTTAT CACAATCACA CCTCCCTCTT CCCAAACAAA 
    GCCTTCTTTC ACCTACTTCT CTCTTTTTGT TTCTAACAAA TATTGATTTT 
    TTTTTCTTGT AACAAATACT TATGAACTTG AANAAAAAAN ATCTACTTAT 
    TTTAGGGTTA TATTTTCAAA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1874859 [Map]; Strand: c
      • AT1G06150.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -1141; Region: intergenic
      • AT1G06148.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 26; Region: intergenic
    Flanking Genome Sequence: 13-0754-1 - 3-prime edge 
    ATTTAACGGT CTCCCTGTAG GAAAGAAGAA AAATAGATCA TAACAACTTC 
    TTTTGGTCAA CAATATTATC TCATAATTGA AGTGAGAATA AAACAAGAAA 
    AACTTTGAAG AGTGAATATT TATCGTCGTT TGTTAAATGG ATATGTGCAT 
    TCAGAGTTTG AAGAAAAACA TGAAAAAGTT TAAAGAGTGA ACACCACAGA 
    CACAACAACC AAAACCGACA AATAAAGAAA GCT

AT1G06148.2

Model type
Protein coding
Curator Summary
Unknown gene
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06150.2

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.1).
Link
InterPro Scan - TAIR