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13-0780-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 73902 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron3 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 13-0780-1 - 5-prime edge 
    CCAACTGATA TAGTTTTGGG GGTAGATCGT AAGAAAGATA ATGATGAAGT 
    GATGATGATA ACGAGCAAAG TGAGAGGGAG AGGGAGAGAG AGAAAGGAGG 
    AAGAGTCGAA GAGTGATTGT TTTTTTTTTT TAANTNGTTT TTTTTNGGNA 
    ANTTTTNAAN TTTTTGGGGG GGCCCCANNA AANCCCANNN TNNTTTTTTT 
    NANNAAAGGG NTTNNTTTNG AANTAAAAAT NAANTTTTTN CTNTTNNTTN 
    NTTNGGGAAA ANCCCCCCCC AAAAANCCCC CAAAAATNCC CTTTTNNTTC 
    CNCCCNNTTN TTNANNNANA ANNTTTTTNC NTTNCNTNAA ANGGNCNNNN 
    TAAATTTCCC CNNNTANCCC TTTTNCCNNT TTNNNTNAGG GGNCANNAAN 
    TNGNNNAANT TNNTTTCCTT TTTTNNANNA AAAAAAAAAA NNNTNCCCNA 
    ANNGNAANCC CCCCTTTTAA GGGNGGNCCC CCNTTTTTTC CCCCCCAAAA 
    ANCCNTTTTN NNNTNTNCCC AAAANCTCCC CTTTTTTTTT TTNANNTTNN 
    AAANCNATTT TNTTNTTTGG CTTTTTTCCC ANANCCCCCC ACNCCNTTTT 
    AACCNTTTTN AATTGGACCC NCCCCAAATT TTTTGGGGGC CCCCCTTGGT 
    NCCCCCCCTG NCCTTNAAAT TAAAANCTTA AANAAAANTT TCCCCGTAAA 
    NCCCTATTCN TNNCC

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR