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13-0783-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11154 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -790; Region: promoter
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -699; Region: promoter
    Flanking Genome Sequence: 13-0783-1 - 5-prime edge 
    TCGACTACAN GGGCCAATCA GATTACATAA TNNCGGAAAA AACAAGGATA 
    GATACNNGCA AACCTAGNAC TNGAGCAATA ATTTGAGTAA TAGAAACAAG 
    AAACCAGAAA TCGAAACGAA ACAGGAACGA AACACAAAAT TTCCTAATTN 
    ATCTTGTGTT TAATTAAGAA AAGAAAGCGN NTAAAAGTTN AAAGGTANAC 
    AGGTGCATNC GACGGGGGTT GNGGGGGNGC NTCCANNGNA NNNANATATT 
    GGGGGGNGNA ANCCCACCNA TTNGGGGGNG GNTAAANAAC AAAAANCCNT 
    NTNNGGGGAA ANNAAAAANN NGCNNGNNTG GGTTTTTTTT NCTTNNNGGG 
    GGGNNCNNNN AAAACCNAAA AGNAAAACCA CNGNGGGGAA AGGGNNAAAC 
    CANGNGGGCA AAAANTANNT TNGGGGTTGG ANTTTAACGA GAAAAANTGN 
    NAAAAAAAAA ATTTNNNGGG CCCCGGNGGT TTTTGGGGGG GANNAAGGGN 
    NNAANGGGGN NCCNNNAACN NNNNCNAAAA AAAAAANGGN TTGGGGAGNN 
    CCCNAAAAAN NTNTGGNGGG GGNAAGGGGG NNGGGGGNNN NNTTNANTTN 
    TTTTNNANNN NGNGGNANGG GGNCCNGAAA ANNGNNNCNN NGNATTTTTN 
    ACCCGNNNAA GAAAAAATNC CCNAAAAANG TTTTTNNNTT GNGGNGGGNT 
    TTAAAGGNGG GGTTTTGGNA AGGGGGGGAN G

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11270 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -906; Region: promoter
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -815; Region: promoter
    Flanking Genome Sequence: 13-0783-1 - 3-prime edge 
    GTAGTCGAGA TGTTTGTAGC CTTGATGGCT CGGGGAAACT CAGAGAGAGA 
    GTTGGTCCCG GTTGCATTCT CCGCTGTCTT ACTGATACCA TAAACACCCG 
    TTTGATCCAT GATTGCCTCT ATTGTATACT CTGATGCCTT CATGATATAT 
    GCATTCTCCA TGTCTCTGTT TCATGTTTAC GCATAAAAAT ATTATCAAGC 
    CTCAAACTTN AATT

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR