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13-0799-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17923793 [Map]; Strand: w
      • AT4G38210.1 - [+] show detail - expansin A20
        Distance: 0; Region: exon1 (CDS)
      • AT4G38215.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-0799-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA CAATGCGAGT TGCTGAAGCC CAGAATCCAT
    GAACAAGAAG TGTTGTTGGG ATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17923783 [Map]; Strand: w
      • AT4G38210.1 - [+] show detail - expansin A20
        Distance: 0; Region: exon1 (CDS)
      • AT4G38215.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-0799-1 - 3-prime edge
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    ATCTTCATTC TCTGCCGCCT CTTTCAAGCC ACTGCCGAAG ATGACTGGAA
    GATAGCCACA GCCACGCTTT CTAGAGACAG GGACGGCTCC TCCTCCGTCG
    CTACTGGTTC TCTTTTCTCT CTCTCCCCCC TATTTTTCTT TCTTCTTTCA
    TCAGGACTAA CTAGACTAAT TGGTTCTGAT AGGAGGCGCT TGTGGGTATG
    GAGATCTGAG GCAGAGCAGC TTTGCCGGCT ACAGCGCAGG CCTGAGCGGG
    AAGCTGTTCA ACAGGGGAAG CAGCTGCGGA GCTTGTCTAG AAGTGCGGTG
    CGTGAACCAC ATCCGTTGGT GTCTTCAAGG CAGCCCCTCC GTGGTGGTCA
    CCGCCACCGA TTTCTGTCCT CCCAATTCGG GACTCTCCTC CGATTACGGA
    GGTTGGTGCA ACTTCCCAAA GGAACACTTG GAACTATCTC ATGCCGCCTT
    CACAGGGATC GCAGAAACCA GAGCTGAGAT GATACCTATA CAGTATAGGA
    GGGTCAAGTG TGGGCGGAGA GGCGGGTTGA GATTCAGCTT GAGCGGGAGC
    TCCCACTTTT TCCAGGTGTT GATAAGCAAT GTGGGCCTCG ACGGGGAAGT
    GGTTGGTGTG AAAGTGAAGG GCCACACAAC GGCTTGGATC

AT4G38210.1

Model type
Protein coding
Short Description
expansin A20
Curator Summary
expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A20 (EXPA20); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, response to karrikin, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A9 (TAIR:AT5G02260.1); Has 2080 Blast hits to 2077 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 2051; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38215.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G38210
Link
InterPro Scan - TAIR