Home
Mutant Lines
13-0813-1

13-0813-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 20458745 [Map]; Strand: w
- AT5G50270.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
  Distance: 0; Region: exon3 (CDS)
- AT5G50280.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: -493; Region: promoter

ATAGCCCTTT ACGGGATGAT CTGAGTTCAG TTCCTGAATG TGTTTTATCG 
AGTCTTGAAA CCGTTGAATG GGTTGACTAT GAAGGAACAG AAGCAGAGAG 
ACAACTGGTA GAGTTTATCT TGAGAAACGG AAGCNTGTTT AAAAAAGCTC 
GTTATCTCCC CCGAATCCGT TAATCCCGAC CAAAAATATG AGATGATTTA 
GGAGCTGACG TTGTCGTGTA GGCGTTCACC CACCTGTCAG CTTGCATTCG 
ACTAAAGTCA GACATGTTCA ATAGTGAACT TGCATTTTGT TTGTTAGTCT 
TTGATATTAT ATGGTCTTTG CTTATCGTTT TGTATCTTCA CTCTCTTGAC 
ATCTCTCTTT ATTAGGCTAG GATTTGAGGT TAAACTTTCA TTTTCTTTGA 
ATCTTTCACT AACTGGGCTT CTCTACTGCT ACTTACTTAT AGATGGGTTT 
CAACTTTCAA GTTAAATACC AAACCTAATT ATAACTTTAA AGTTTGTCTC 
ACGTCTTTTG CTCTTAAATT GNGAATTTTG AGCCTTTANC TTCCCCTGAA 
AGTGGGAAGC TGANCCATGT NCNTGGNGGN TTTTTTTTTT GGNNACCAAA 
ACCNNNNTNN NTTCCTTTNN TNTATNTNAA NGANTTANTN CCCNGNNCNN 
NANNNNNNNA

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 20458676 [Map]; Strand: w
  - AT5G50270.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
    Distance: 0; Region: exon3 (CDS)
  - AT5G50280.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: -562; Region: promoter
Flanking Genome Sequence: 13-0813-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGC 
CCTAGGTGAA CAAATCAAAT GGCCATGGTG CTGAGATAAA CGGTACATAA 
GACACTGAAT GAATTGGAAA ATAACCTGAT CAAAGACACT GATCTAATAA 
TTGGGATGGA ATATATATAT GTACCTTTTC AAGTTTGAGA GATATT
```

AT5G50270.1

Model type: Protein coding
Short Description: F-box/RNI-like/FBD-like domains-containing protein
Computational Description: F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G32375.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G50280.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: embryo defective 1006 (EMB1006); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR