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13-0858-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2040140 [Map]; Strand: w
      • AT1G06660.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
      • AT1G06670.1 - [+] show detail - nuclear DEIH-boxhelicase
        Distance: -293; Region: promoter
    Flanking Genome Sequence: 13-0858-1 - 5-prime edge 
    CTACAGACTG ATAAATCGAT GAATCTGAGC ACGGATCTGC ACAAGGGGCT 
    TAGGTTTCGG TTCATCAACA GTCGTCTCAT ATCATTTGAT TTCCTCAAGA 
    GCGAAACAGT GATTGACCAA GAAAACAATC AGGCNTGACG ATTTTCCCGA 
    GAAACACGCA GAAAATGAGA GAGAAAATGC CGTTGTTTTG AAATTTGAAA 
    CGAAAGGGTG CGAGGGAATG AATCAGGTGC GGTGCAGGTC TTCCCGATCA 
    CTGTTTTCTG TTAATTTCCT TCTGGCCCAA AAGGCCCAAA AAGCCCAAAA 
    GACTCCAAGT TATTCAATAA GGAGTTTTTT TTTTNTTTTN TTAAAAAAAN 
    GTTNGGGGAA AAANGGGAAA GTAGGGCAAG GNGGGAGGNG GAAACCAAAA 
    CCGGAACANT TTNNTAAACA ANNGTTTTTN GGGAAGCTNA NNTTNCCGCC 
    NCNTAGTNTT NGCTCANANG TTTTGAGAAA AAAAAAACCT TNNAAAGCNA 
    NGGNGAAAAA AAAAAAAGGA TACAAANCNT ACTNGTTTTT GCNAANCCNC 
    TGGGGGCTTG GGCCNCCAAG GNCCTGGAGG ATTTTCNCNN CCNCCGGGAN 
    CANATNGGAA GTTNNCCCTT NNAACCCANG GAATTNAAAA AGTTTTTTCC 
    TTGGGNNTNA AANGGGGNNN NTTNGGCNAA NNTNNAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2040024 [Map]; Strand: w
      • AT1G06660.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
      • AT1G06670.1 - [+] show detail - nuclear DEIH-boxhelicase
        Distance: -409; Region: promoter
    Flanking Genome Sequence: 13-0858-1 - 3-prime edge 
    GTCTGTAGAG CCATGGCTTG TTTTCTCGAC TGCTTCCGCG CCAGAGACAA 
    TCGCTCTACT AGTAATCTCG TCTCTCACTC TTCACTCGCC AATTCCAGAG 
    TAATTCTTTA GCTTCTCTTG CTTTTTCCGC TTCTTTTCTT TGCATGATCC 
    TGTCAATTTT GCTGCTACAA TGATCGTATA AGAAATAGAT CGCAATTCGC 
    AATGCCCTGT TTGATCCTTG AGCTGAATTT TGTATATGAT GGATTTTAGT 
    CTGTTGGCTT CTGATCGATT CTTTTGATTT TTGATCAAGA TCGTATCGAT 
    CTGACCCAGA ATTATATGTT TCTTTTCTTA TTTATCTTCA GAAAGCACAG 
    GACTCGCAGA ATGATTTGTC AGCTTTGTTT CTTTCTGAAG GTAAATCTCT 
    TTTTCGATGT GTTTATATCA GGAATCGAGA TGATTACTTG TTTTTGGTAC 
    TGTTCTTGTT AATAATATAA GGGTTTTGTT CTTGATTTTT ATAGAGAAAT 
    CAGCTTCTTC GCCTTGCCTT GACAAAGAAA GATTNGATTN ANATTCTATA 
    CATATTGACA AAGGCCTTAN GGATGAGGTA TGATTTNTAT TNGAAGCATT 
    GCCTNTATTN ATGTGATTCT AACCATACTG GATTCTTATT CCTTTTATNA 
    NGATCAAGAC TTGNGCCCTN GGATNGATNN GATNTCTCAN CTAACTC

AT1G06660.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30820.2); Has 166 Blast hits to 144 proteins in 35 species: Archae - 0; Bacteria - 17; Metazoa - 13; Fungi - 20; Plants - 104; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06670.1

Model type
Protein coding
Short Description
nuclear DEIH-boxhelicase
Curator Summary
nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteins
Computational Description
nuclear DEIH-boxhelicase (NIH); CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Ankyrin repeat-containing domain (InterPro:IPR020683), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Single-stranded nucleic acid binding R3H (InterPro:IPR001374), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase in vascular tissue and tapetum (TAIR:AT2G30800.1); Has 26020 Blast hits to 16191 proteins in 1841 species: Archae - 22; Bacteria - 7563; Metazoa - 5966; Fungi - 2932; Plants - 1417; Viruses - 339; Other Eukaryotes - 7781 (source: NCBI BLink).
Link
InterPro Scan - TAIR