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13-0860-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14288421 [Map]; Strand: c
      • AT4G28970.1 - [+] show detail - transposable element gene
        Distance: -831; Region: promoter
      • AT4G28980.1 - [+] show detail - CDK-activating kinase 1AT
        Distance: -18; Region: promoter
      • AT4G28980.2 - [+] show detail - CDK-activating kinase 1AT
        Distance: -18; Region: promoter
    Flanking Genome Sequence: 13-0860-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    ATCATCCATC ATCAGGAAAG ATCCGAAGAA AAGCGACGCC GTTTTAAAGG 
    AGATGGATAA ACAACCGGCG ACCAGTTGGA GTATCCATAC CCGGCCGGAG 
    ATAATCGCCA AGTACGAGAT CTTCGAGCGA GTCGGATC

AT4G28970.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 8.1e-76 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR

AT4G28980.1

Model type
Protein coding
Short Description
CDK-activating kinase 1AT
Curator Summary
Encodes a CDK-activating kinase that regulates root initial cell differentiation. Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription.
Computational Description
CDK-activating kinase 1AT (CAK1AT); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase D1;3 (TAIR:AT1G18040.1); Has 87352 Blast hits to 72841 proteins in 3452 species: Archae - 58; Bacteria - 8929; Metazoa - 34591; Fungi - 11921; Plants - 15740; Viruses - 134; Other Eukaryotes - 15979 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G28980.2

Model type
Protein coding
Short Description
CDK-activating kinase 1AT
Curator Summary
Encodes a CDK-activating kinase that regulates root initial cell differentiation. Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription.
Computational Description
CDK-activating kinase 1AT (CAK1AT); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase D1;3 (TAIR:AT1G18040.1); Has 87352 Blast hits to 72841 proteins in 3452 species: Archae - 58; Bacteria - 8929; Metazoa - 34591; Fungi - 11921; Plants - 15740; Viruses - 134; Other Eukaryotes - 15979 (source: NCBI BLink).
Link
InterPro Scan - TAIR