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13-0878-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20139002 [Map]; Strand: w
      • AT5G49620.1 - [+] show detail - myb domain protein 78
        Distance: 0; Region: intron1 (CDS)
      • AT5G49620.2 - [+] show detail - myb domain protein 78
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-0878-1 - 5-prime edge
    GGGATAAACT AACAAAATCC TTTCTTGAAC TTTCACAACA AACTTTTATC 
    CAAAAAAAAA AAAAAACCTT TCAAACCAAA ANNNTTTNNT TANCAAAAAA
    GGGGGCCCCC NNGGNNAANT AAAAAAAANC CCTTTGGGNA ANCAAANNNC
    CCTNGGGNNN AANNTNGGGN TGGTNCCTTT TTTTTTNTTN NTTTCNAANN
    AGGGNCCCCT TTTNTCCCCC CCGTTTTTCC CTNTTTAAAT NAAAGGGNNT
    TTTTNNNNAA NTAAANNTNA NANTTTNNNC CCGGCCCNCC NNNCNAAAAA
    NTNCCTTNCC CNTTCCCCNN NANTACCANN GNANTNGNNN ACCNTNAANT
    TTNCCNAANN NGCCCNGGGC CCTNNCTTTN CNNCCTTTTT TTTTNCCNTT
    TTGGNAANTN NCNANCCGGG NCCGNNANCC CCCCNNNCCN TNNA
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20138922 [Map]; Strand: w
      • AT5G49620.1 - [+] show detail - myb domain protein 78
        Distance: 0; Region: intron1 (CDS)
      • AT5G49620.2 - [+] show detail - myb domain protein 78
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-0878-1 - 3-prime edge
    ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    AAAAAAGGAA AAAACAAATC ATGGGGATAA AACAAAAAGA GTGTCATGCT
    TTTGTGTTCC GTTCTCTCAT TATTTTTCTT CTTTCTGAAT TGTTAAAATT
    ATCTATGATC ATTCCTAATG AAATCGTGTT TTGCTATTCG GACTCAATTA
    TTATAACNTT TTAGGAAATG GATTCAATTA TTTAACCCTC TAGGTTTTGA
    ATAGAGTAAC TCTATTCGTG TTGAAATAAA TGAAATAATT GATCAACATC
    TATATGGGAA GAGCACTAAC GCAATGGAAG AAAGTTTTCA GGAGACAAAG
    ACCCTTTTTG AGAGTTTGCC TCATAGCAAC GGTCCCTATA ATTTCTAGAG
    TAAATTTGAT AACTTTACCA AATATATATG ATCATTATCA TGAGTTTCTT
    GCGTATGAAA TCATCATACA ATATACGTGT ACACGATGAT GTCTAATTAA
    ATAATAGTAA CTTCCAATAT AAAACAGAAC TCAAAAGGAC CGGAAAAAGC
    TGCAGACTTC GGTGGCTGAA CTATCTCCGA CCAGATGTGC GCCGTGGAAA
    CATAACCCTC GAAGAACAAC TCTTGATTCT TGAACTTCAC ACACGTTGGG
    GCAATAGGTA CGTTTTTTAA TTACGGTCAT TTATACACTT TATTTTCTAC
    TAACAAGATT TTGATCACAA AGATGGCTAA ATATTATTGT ACACGAATTA
    GTTCACATCT TTAGTCATCA ATACATTTTA TTTTCTGTTA CCAAGAGTTT
    GAAGATTGGT TTAT

AT5G49620.1

Model type
Protein coding
Short Description
myb domain protein 78
Curator Summary
Member of the R2R3 factor gene family.
Computational Description
myb domain protein 78 (MYB78); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 108 (TAIR:AT3G06490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49620.2

Model type
Protein coding
Short Description
myb domain protein 78
Curator Summary
Member of the R2R3 factor gene family.
Computational Description
myb domain protein 78 (MYB78); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 108 (TAIR:AT3G06490.1).
Link
InterPro Scan - TAIR