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Mutant Lines
13-0878-1

13-0878-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 20139002 [Map]; Strand: w
- AT5G49620.1 - [+] show detail - myb domain protein 78
  Distance: 0; Region: intron1 (CDS)
- AT5G49620.2 - [+] show detail - myb domain protein 78
  Distance: 0; Region: intron1 (CDS)

GGGATAAACT AACAAAATCC TTTCTTGAAC TTTCACAACA AACTTTTATC 
CAAAAAAAAA AAAAAACCTT TCAAACCAAA ANNNTTTNNT TANCAAAAAA 
GGGGGCCCCC NNGGNNAANT AAAAAAAANC CCTTTGGGNA ANCAAANNNC 
CCTNGGGNNN AANNTNGGGN TGGTNCCTTT TTTTTTNTTN NTTTCNAANN 
AGGGNCCCCT TTTNTCCCCC CCGTTTTTCC CTNTTTAAAT NAAAGGGNNT 
TTTTNNNNAA NTAAANNTNA NANTTTNNNC CCGGCCCNCC NNNCNAAAAA 
NTNCCTTNCC CNTTCCCCNN NANTACCANN GNANTNGNNN ACCNTNAANT 
TTNCCNAANN NGCCCNGGGC CCTNNCTTTN CNNCCTTTTT TTTTNCCNTT 
TTGGNAANTN NCNANCCGGG NCCGNNANCC CCCCNNNCCN TNNA

3 prime edge [+] show sequence

Chromosome: 5; Position: 20138922 [Map]; Strand: w
- AT5G49620.1 - [+] show detail - myb domain protein 78
  Distance: 0; Region: intron1 (CDS)
- AT5G49620.2 - [+] show detail - myb domain protein 78
  Distance: 0; Region: intron1 (CDS)

ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
AAAAAAGGAA AAAACAAATC ATGGGGATAA AACAAAAAGA GTGTCATGCT 
TTTGTGTTCC GTTCTCTCAT TATTTTTCTT CTTTCTGAAT TGTTAAAATT 
ATCTATGATC ATTCCTAATG AAATCGTGTT TTGCTATTCG GACTCAATTA 
TTATAACNTT TTAGGAAATG GATTCAATTA TTTAACCCTC TAGGTTTTGA 
ATAGAGTAAC TCTATTCGTG TTGAAATAAA TGAAATAATT GATCAACATC 
TATATGGGAA GAGCACTAAC GCAATGGAAG AAAGTTTTCA GGAGACAAAG 
ACCCTTTTTG AGAGTTTGCC TCATAGCAAC GGTCCCTATA ATTTCTAGAG 
TAAATTTGAT AACTTTACCA AATATATATG ATCATTATCA TGAGTTTCTT 
GCGTATGAAA TCATCATACA ATATACGTGT ACACGATGAT GTCTAATTAA 
ATAATAGTAA CTTCCAATAT AAAACAGAAC TCAAAAGGAC CGGAAAAAGC 
TGCAGACTTC GGTGGCTGAA CTATCTCCGA CCAGATGTGC GCCGTGGAAA 
CATAACCCTC GAAGAACAAC TCTTGATTCT TGAACTTCAC ACACGTTGGG 
GCAATAGGTA CGTTTTTTAA TTACGGTCAT TTATACACTT TATTTTCTAC 
TAACAAGATT TTGATCACAA AGATGGCTAA ATATTATTGT ACACGAATTA 
GTTCACATCT TTAGTCATCA ATACATTTTA TTTTCTGTTA CCAAGAGTTT 
GAAGATTGGT TTAT

AT5G49620.1

Model type: Protein coding
Short Description: myb domain protein 78
Curator Summary: Member of the R2R3 factor gene family.
Computational Description: myb domain protein 78 (MYB78); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 108 (TAIR:AT3G06490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G49620.2

Model type: Protein coding
Short Description: myb domain protein 78
Curator Summary: Member of the R2R3 factor gene family.
Computational Description: myb domain protein 78 (MYB78); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 108 (TAIR:AT3G06490.1).
Link: InterPro Scan - TAIR