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13-0885-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108768 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -157; Region: promoter
    Flanking Genome Sequence: 13-0885-1 - 5-prime edge 
    AAAAAACTTG CGAGTTTTGT TTTGTTTCCC AACTTGACGG TTTGATAGAA 
    GAATAAGAAG AAAACAGAGA GAGACATGAT TAGAAACTCC TCTTCCTCTT 
    GAATTTTGAC TTTTGACTTT TCAGTTATCG CCGGTCTGAT ATGGCCTTCG 
    TCTTTCTTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108651 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -40; Region: promoter
    Flanking Genome Sequence: 13-0885-1 - 3-prime edge 
    ATTTAACAAC GCGTCTTCTA CCTCCTCCTC ATCGGACTAT TTATCTATAG 
    TCTTCGTTAG ATCAATTCCT CTGTTTTACT CCTAAGTTTC GAGATCCACA 
    TTTCTTTTTA ACCTCATCTC ATCTCTTAGT CGAGATCTTC ACTTTCTGAT 
    GACAATAGGG TCGTTTTTCT CTTCTCTCTT ATTCTGGCGC AATTCTCAGG 
    TAACCTCAAT CGACTATTCT CTGTTCTACT CCTTTTTTCT TTATCATTTT 
    AAAAATCCTA ACATTGAAAA TAAAGTAGTT AAATAGAGTC AACGAAAACA 
    TTGTTAATGA AACAGTGGTG TGCTTAGCAT AACGAATCAG ACAGACAAAA 
    AGTGTCTGGA TC

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR