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13-0890-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30086319 [Map]; Strand: w
      • AT1G79990.1 - [+] show detail - structural molecules
        Distance: 0; Region: exon7 (CDS)
      • AT1G79990.3 - [+] show detail - structural molecules
        Distance: 0; Region: exon3 (CDS)
      • AT1G79990.5 - [+] show detail - structural molecules
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-0890-1 - 5-prime edge 
    TCATTCTTAT TCGGGACTGT ATTGACACGC TTCTTTGTTT TGATCAGCGT 
    AAGTTTGCTC AAAGATCAGA AAGAGTCAAA TCTGTAGATC TCCATCCAAC 
    AGAGCCATGG TAATTTGAGC GCATTCATTC TTCATTGCTT TATATATCGT 
    TAAGGAAACA AGTACTAATC CATAGATTGT TTCAGGATC

AT1G79990.1

Model type
Protein coding
Short Description
structural molecules
Computational Description
structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), Integral membrane protein SYS1-related (InterPro:IPR019185), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 74874 Blast hits to 32688 proteins in 816 species: Archae - 58; Bacteria - 8441; Metazoa - 30042; Fungi - 16255; Plants - 9898; Viruses - 0; Other Eukaryotes - 10180 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79990.3

Model type
Protein coding
Short Description
structural molecules
Computational Description
structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Coatomer, WD associated region (InterPro:IPR006692), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 75407 Blast hits to 32587 proteins in 820 species: Archae - 58; Bacteria - 8535; Metazoa - 29979; Fungi - 16971; Plants - 9768; Viruses - 8; Other Eukaryotes - 10088 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79990.5

Model type
Protein coding
Short Description
structural molecules
Computational Description
structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 74269 Blast hits to 32109 proteins in 811 species: Archae - 56; Bacteria - 8450; Metazoa - 29737; Fungi - 16170; Plants - 9747; Viruses - 0; Other Eukaryotes - 10109 (source: NCBI BLink).
Link
InterPro Scan - TAIR