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13-0907-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
vascular leaf (PO:0009025)
  • abnormal (PATO:0000460)
    (Leaves::abnormal shape)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 450001 [Map]; Strand: w
      • AT3G02270.1 - [+] show detail - Trimeric LpxA-like enzyme
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-0907-1 - 5-prime edge 
    GGNGATGGCN ANATAGCNCC TGGAANAGAN CTGCAGNNGC GNGTCCNAGG 
    ANGGCNNCGG CNTAGNCCNG NGGACACTGT GGAGNGCGGC TAGGATNANC 
    NAANGGTGAT GNAGATGCCG TCNTAAGNCT TGATTNATNG CNTGANTCTG 
    GGGAAGCTTA NCAAGCCCGN GCTNGCGCAT GANCGNTNTN CATCNAGGTN 
    CATACTGGGA ATGTCCGCCT CTGGATTATA TCCTTGCTCA NTGCTCACCA 
    TGTCATAGCT CCTGAAATTT TCAATCCTAG AAGCATAACA CGAGCTAATC 
    TCATGAGTGA AAATCTTGTA ACCGATAATG TCATCAGCAA GAACACCTTC 
    CACAAAATCA CAACGCATAT GTTGGTAATC GAAGTTATCC ACAAATAGAC 
    TAAGCACCTC AAGAGAACAT ATGTCAATGT AACAATCCTG CATATCACTA 
    CATAACAAAA CAGATGGATT ACGATCCAGC AATGATTTAT CGAAGCAGAT 
    GTTGTCCTCA TCGTAATAAN AGAANCTGGT TTGCTAAAGG AATTTACAGC 
    GANGAAGAGT NGATGATNGG NGATGAANTG ACTGTCTTGA TAACCATAGT 
    CATGATAGNT AANAATATTT ANTNTTTANG ANCTNGNGTG TACTTGNAAT 
    CAATCTGCGT CAGGGGCATG TNATAACTNT CAATNNGGAG CNAGGACATA 
    GGTNNNCGTG ATTCNGAAAC GGCNGNNATN CGNGGCTGGA GGNTNTAAGN 
    AANTCNNTNC CNGNCCTNGN NAGNTAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 449891 [Map]; Strand: w
      • AT3G02270.1 - [+] show detail - Trimeric LpxA-like enzyme
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-0907-1 - 3-prime edge 
    ANTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATAT 
    TCAATGGATG TGAGATAAGG AATGCTATTG TATGTGATGA GGTGAAAGTG 
    TGTGCAGGAG CTATTGTGAA ACCTGGTGTT GTGTTGTCTT TTAAGGTTGT 
    AGTCGGGAGG GACTTTGTTG TACCTGCATA TTCACAGGTT TCACTACTCC 
    GACAACCAAT GGAAGAAGAC AGTGATGAAG AAAATCTTTT GTCAGGTGTA 
    GATTTGCAAA TGGAGTCTAA GCT

AT3G02270.1

Model type
Protein coding
Short Description
Trimeric LpxA-like enzyme
Computational Description
Trimeric LpxA-like enzyme; FUNCTIONS IN: binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process, regulation of translational initiation; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzyme (TAIR:AT2G34970.1); Has 3426 Blast hits to 3381 proteins in 843 species: Archae - 306; Bacteria - 1238; Metazoa - 499; Fungi - 246; Plants - 265; Viruses - 3; Other Eukaryotes - 869 (source: NCBI BLink).
Link
InterPro Scan - TAIR