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13-0912-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2768861 [Map]; Strand: c
      • AT1G08680.1 - [+] show detail - ARF GAP-like zinc finger-containing protein ZIGA4
        Distance: 0; Region: exon13 (3UTR)
      • AT1G08680.2 - [+] show detail - ARF GAP-like zinc finger-containing protein ZIGA4
        Distance: 0; Region: exon13 (3UTR)
      • AT1G08680.3 - [+] show detail - ARF GAP-like zinc finger-containing protein ZIGA4
        Distance: 0; Region: exon14 (3UTR)
    Flanking Genome Sequence: 13-0912-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC AGGTGGAGCC TTTGCTAACT CTGCTACTAA 
    AGATACATGC ATGACTAGAT ATTTCATATT GCTGGCTTCT TGTATTTTGA 
    CCATTTTCAG AAACTCCCAG GATGACGTAG TTTTCTGAAC GCAGAAAAAT 
    GAATT

AT1G08680.1

Model type
Protein coding
Short Description
ARF GAP-like zinc finger-containing protein ZIGA4
Curator Summary
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.
Computational Description
ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2); Has 3488 Blast hits to 2959 proteins in 240 species: Archae - 0; Bacteria - 4; Metazoa - 1486; Fungi - 545; Plants - 477; Viruses - 2; Other Eukaryotes - 974 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G08680.2

Model type
Protein coding
Short Description
ARF GAP-like zinc finger-containing protein ZIGA4
Curator Summary
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.
Computational Description
ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2); Has 3491 Blast hits to 2950 proteins in 241 species: Archae - 0; Bacteria - 7; Metazoa - 1485; Fungi - 538; Plants - 477; Viruses - 2; Other Eukaryotes - 982 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G08680.3

Model type
Protein coding
Short Description
ARF GAP-like zinc finger-containing protein ZIGA4
Curator Summary
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.
Computational Description
ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR