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13-0932-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3900114 [Map]; Strand: w
      • AT1G11595.1 - [+] show detail - pseudogene, putative glucose 6 phosphate/phosphate translocator, blastp match...
        Distance: 415; Region: intergenic
      • AT1G11600.1 - [+] show detail - cytochrome P450, family 77, subfamily B, polypeptide 1
        Distance: -1898; Region: intergenic
    Flanking Genome Sequence: 13-0932-1 - 5-prime edge
    GATCAAACAC CTTAAAATCT TTGCCTACTT CTACATGATT ATATAATATA 
    TACTTTACCT TCTTCCAGTA AGATCTAAAG TTCAACTAGT TGACTAATCT
    AATAAAGTTG ATGATACGAG ACCTACTAAT ATATCATATT TTCTTTTTCT
    TGGAATGTTT ATTATAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1881313 [Map]; Strand: w
      • AT4G03950.1 - [+] show detail - Nucleotide/sugar transporter family protein
        Distance: 202; Region: intergenic
      • AT4G03960.1 - [+] show detail - Phosphotyrosine protein phosphatases superfamily protein
        Distance: -6215; Region: intergenic
    Flanking Genome Sequence: 13-0932-1 - 3-prime edge
    GTTTGATCTT CCAACTCCAT TTGCACATAT CCTACGATTA CATAAGCCTC 
    TTGAGATCTT CACAGGAATT ATCTTTTATC CTCTGCTCTC AACATCTTGG
    TGCATCAAAC CCTTATGTGA AAACCGCTCC TCCAACTTCC TCACTCCTTA
    GCATGCTCAA AGATTCAAAA CGAACAAAAG AACATCATCA GCTCAGGAAT
    CGAAGAGCTT TAAGTTCAAG ATTGAATT

AT1G11595.1

Model type
Pseudogene
Computational Description
pseudogene, putative glucose 6 phosphate/phosphate translocator, blastp match of 60% identity and 2.3e-78 P-value to GP|2997593|gb|AAC08526.1||AF020816 glucose-6-phosphate/phosphate-translocator precursor {Solanum tuberosum}
Link
InterPro Scan - TAIR

AT1G11600.1

Model type
Protein coding
Short Description
cytochrome P450, family 77, subfamily B, polypeptide 1
Curator Summary
member of CYP77B
Computational Description
"cytochrome P450, family 77, subfamily B, polypeptide 1" (CYP77B1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 77, subfamily A, polypeptide 9 (TAIR:AT5G04630.1); Has 32592 Blast hits to 32103 proteins in 1633 species: Archae - 48; Bacteria - 3170; Metazoa - 12143; Fungi - 6852; Plants - 9226; Viruses - 3; Other Eukaryotes - 1150 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03950.1

Model type
Protein coding
Short Description
Nucleotide/sugar transporter family protein
Computational Description
Nucleotide/sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate/phosphate translocator 2 (TAIR:AT1G61800.1); Has 691 Blast hits to 691 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 114; Fungi - 7; Plants - 475; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03960.1

Model type
Protein coding
Short Description
Phosphotyrosine protein phosphatases superfamily protein
Computational Description
Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic (InterPro:IPR020428), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT1G05000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR