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13-1070-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2444709 [Map]; Strand: w
      • AT1G07901.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -586; Region: promoter
      • AT1G07910.1 - [+] show detail - RNAligase
        Distance: -761; Region: promoter
    Flanking Genome Sequence: 13-1070-1 - 5-prime edge
    TGTAGCACTA CCCAAGTCAC CGGAAAGGTA AAACAATGAA GCCGTGGGAT 
    TAAACCTTCA CAGATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6509053 [Map]; Strand: c
      • AT1G18860.1 - [+] show detail - WRKY DNA-binding protein 61
        Distance: -439; Region: promoter
    Flanking Genome Sequence: 13-1070-1 - 3-prime edge
    NNNNAGANAA NCTCNTTACN GTAGCACTAN TCNAGNTACC GGNAANNGTA 
    AAACAATTNA NNCCGTGGGA TTAAACCTTC ANANATCACN CNTNCTCCNG
    GGCCTGNCTA CCACGNCGNT GCCCTNNANN TTATCACATA GATGGTNNGT
    TNTATCCANN ATCCCTTTTT ATTAATTGAT TGATTAGNCT NAATNNATGA
    ATCTTAATTT GAATTCTANA NTCATACTNA ATTNNATCAC CAGCCCGGTC
    CGTCGNCCAC GCNTGCCCTA TANGGGNNGA NNNATTANNN CTTGCCNTTC
    CNATTTCNCT TATNTNTNAC NGATANTGGN CNGCAANTTN NATNTNATTT
    NNANNTGGTT AACCTACTTT NTGCCTNGGA TGATTNTNTG AACTTTTNTT
    ATTTTTNCNT ATCAATTATA ANAAANGCAT NTTTTCTTNN AANTTNCNTN
    TTTNTNNTNN ANANTTTNTT CTNATNNTNT TNNNAAGATG GNTNTTTTNN
    TNNAAACTGT ANNGNTTANG NAANGAGNNN AACNAGNTNN NCNNNNGNCN
    NGGGNGACNN GCATNNAANA TTANNTCNTC NNCCNNTNCN TTNGTNTTCC
    NNNTAANCTN CCCGNATTTN NNTTTTTTNT NNCTATCGNN ANGCNANNNT
    NCTCTTAGNC ANATCAAATC NNNNTCGTAN AANGANTGAN NNANNGNCNT
    GNNTCNNNTT TTNCNCCCNT GTGTNGCCCC CANTNAANNN CNNCATCGAG
    NTNCNNTANG GACCANANTT T

AT1G07901.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G07910.1

Model type
Protein coding
Short Description
RNAligase
Curator Summary
Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains
Computational Description
RNAligase (RNL); CONTAINS InterPro DOMAIN/s: tRNA ligase, phosphodiesterase, fungi (InterPro:IPR015965); Has 209 Blast hits to 196 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 200; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G18860.1

Model type
Protein coding
Short Description
WRKY DNA-binding protein 61
Curator Summary
member of WRKY Transcription Factor; Group II-b
Computational Description
WRKY DNA-binding protein 61 (WRKY61); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 72 (TAIR:AT5G15130.1); Has 5252 Blast hits to 3559 proteins in 289 species: Archae - 0; Bacteria - 31; Metazoa - 146; Fungi - 97; Plants - 3463; Viruses - 1; Other Eukaryotes - 1514 (source: NCBI BLink).
Link
InterPro Scan - TAIR