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13-1081-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14440925 [Map]; Strand: c
      • AT4G29310.1 - [+] show detail - Protein of unknown function (DUF1005)
        Distance: -1202; Region: intergenic
      • AT4G29330.1 - [+] show detail - DERLIN-1
        Distance: -3894; Region: intergenic
    Flanking Genome Sequence: 13-1081-1 - 5-prime edge 
    CGCTTTGGGA GTAAGCCAAC ACATTTCATG GTCGGTCTCT CTAACATCAT 
    GTTCATGCTG AACGTGTGCT CCTTTGTGTT ATTTTAGTTT TCCAAAAAGT 
    TTTGCGCCTA GTACTATAGT TTTGGACCTA TGTCTATAAT TCTTTCGGAC 
    CAGAGAGACT CAAAGATTGA AAACTAGTCT GACTATCTAT TGTTGAACAT 
    GAAGAAAGTT TCTAAATATG ATTAGTGTTG TCTTGTGAAT CATTAAAATA 
    AATTAGCCGA AAGAGTTAAT TGATTCGAGT AATTATTTAA TTCACAATTA 
    TACACTAATT CACCATTTAT AAATATAACA GTCAAACGCC ACTACCAACT 
    ACCAGTCTAC GAGCGCCGNC NACAAACAGA AGATNACCAN NCCNGGCCGT 
    NNACCACNCN TGCCCNANAG NGNG

AT4G29310.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1005)
Computational Description
Protein of unknown function (DUF1005); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1005) (TAIR:AT1G10020.1); Has 138 Blast hits to 138 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G29330.1

Model type
Protein coding
Short Description
DERLIN-1
Computational Description
DERLIN-1 (DER1); CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599); BEST Arabidopsis thaliana protein match is: DERLIN-2.2 (TAIR:AT4G04860.1); Has 918 Blast hits to 916 proteins in 241 species: Archae - 0; Bacteria - 22; Metazoa - 340; Fungi - 200; Plants - 147; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Link
InterPro Scan - TAIR