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13-1109-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2440012 [Map]; Strand: w
      • AT1G07890.3 - [+] show detail - ascorbate peroxidase 1
        Distance: 347; Region: intergenic
      • AT1G07900.1 - [+] show detail - LOB domain-containing protein 1
        Distance: -2610; Region: intergenic
    Flanking Genome Sequence: 13-1109-1 - 3-prime edge
    CTTTGGTAAT CATAGTGGTG ACATTATAAG CCAGAGCCAT CCGTCTCAGC 
    TCACGCCGGT CTTTGATCTA AAGCATCGTC TGATCAACAT CGATGGAATC
    CGCCTATTCG GGCACCACAT CATTACATGC NTGTTGCATG TGGTGATAGA
    ATCACNTTTG GATTGGTTTA TGGGTATGGA ACTAAAATTC GGTAAGTGAA
    CTGGTCTAGA TTGGTTTTGG AACAATGTCA GGTTTACCAT TGATCTTGTG
    TAAATCTCGT AGTACATAGT CAAATCATGT TATACTAATA CTTCTACTTC
    TGATTAAAGA TTTGGCTGTT TATCACTTTA TATAGGCAAT TAGCCACTGT
    ATCTTCAAAC TCTTAATCCA AGTTCTACTG TTATTAGAGA CTAAGCAGAT
    ATGAATGGAT TTGAGGCATA AATATCGAGA GAAATTAATT TTATTAATGT
    GTCTAAGCAG CAAAAGCGCA ACGGATGTGT TCAAATCACA ACCCACCGAA
    AAAAACAGAT ACGTAAATCC GAGAGTACAT TAAGCAATCA TATGACAAAG
    TTCAAATGCA ATGCGACCCC TCCAGCCCCC AACCAAAAAC AGCCATGACT
    CTCGGGGAGA CACACACACA CACACAGAGC ATACGTCACA GCTTAAGCAT
    CAGCAAACCT GCAACCAACA GATACAAACN CAAATCACAC CACTGAATTA
    ATATTTACTT TCTAAATGAT CATAAA

AT1G07890.3

Model type
Protein coding
Short Description
ascorbate peroxidase 1
Curator Summary
Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.
Computational Description
ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G07900.1

Model type
Protein coding
Short Description
LOB domain-containing protein 1
Computational Description
LOB domain-containing protein 1 (LBD1); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 11 (TAIR:AT2G28500.1); Has 1035 Blast hits to 1030 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1035; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR