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13-1210-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2316572 [Map]; Strand: c
      • AT2G05980.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-1210-1 - 5-prime edge 
    CTTACTACAT TGCCTGAATT TCTGCAAATT GTGAAAGATT TTTGGGATGG 
    TACACCTGCA CTTTTTCATC CTACCTCTGC AATGTTTCGT TTTTCCAAAA 
    AGCTAAAGGG TCTCAAGCCT ATTTTAAAGT CACTTGGTCG AAGTACACTC 
    CATAATCTGT CTGTAAGAGT GGCTGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13652046 [Map]; Strand: w
      • AT4G27250.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -7621; Region: intergenic
      • AT4G27260.1 - [+] show detail - Auxin-responsive GH3 family protein
        Distance: -1563; Region: intergenic
    Flanking Genome Sequence: 13-1210-1 - 3-prime edge 
    ATCGTGAAGA TAGCCATTTA ATGATGGGTT AGCATTTTTG TTTTGCTAAT 
    TAGTGTTTTG TTTTGGACAT GCTTCGTTAT GTTGTTTACG AACATTAATC 
    TAGAAAAGTA TACCTAAGAA TGGTGTTTCT ATATATAGAG AAACCGAATT

AT2G05980.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.0e-42 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT4G27250.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: dihydroflavonol 4-reductase (TAIR:AT5G42800.1); Has 11174 Blast hits to 11160 proteins in 1934 species: Archae - 191; Bacteria - 4752; Metazoa - 248; Fungi - 837; Plants - 2457; Viruses - 63; Other Eukaryotes - 2626 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27260.1

Model type
Protein coding
Short Description
Auxin-responsive GH3 family protein
Curator Summary
encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.
Computational Description
WES1; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G54510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR