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Mutant Lines
13-1214-1

13-1214-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity /structure development stage	Phenotype
vascular leaf (PO:0009025)	hyponastic (PATO:0002329) (Leaves::hyponastic)

Anatomical entity
/structure development stage

Phenotype

vascular leaf (PO:0009025)

hyponastic (PATO:0002329)
(Leaves::hyponastic)

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 7017351 [Map]; Strand: w
- AT5G20730.2 - [+] show detail - Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-re...
  Distance: 0; Region: exon11 (CDS)
- AT5G20730.3 - [+] show detail - Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-re...
  Distance: 0; Region: exon11 (CDS)
- AT5G20730.1 - [+] show detail - Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-re...
  Distance: 0; Region: exon11 (CDS)

CAATCCACCA CCAAGAACTC CAGCATCGTT GACAGCTAGA TCGTTCGAAA 
TGGCGGGCAC ATTGGGGACA CCAAAAGATT GAGTTCTTAC AGCTGAAGTA 
GACATCTCTG TACCAATGTC ATTTGTCACT CCTCCATAGT TTGAAAGCAT 
GTTCTGAAGA TCTTTCTGGG AGTCATATCC CCTCGAGAGT AGCGTGTCAG 
GCACAAAGCC ATTATCAACA TTAGCTCCAC CGAGCAAGCT GTTCCTGGAA 
TCACCGTCAA GGCCAAAAGT TGGAGCCAAG AAATTTTGTT GTCTGTTGTT 
TTCGCCTCCA TCTAAACCGT AAGAAGTTCC AGAGGCAGAT GCTTCTAGTT 
GATGATCTGT TAAACTAGCT TTGGACTTTT GCTGACCCAC GAGTTCTTGT 
TTTAGCCGCA TATCGGATTT GCTGTAAAGA TCCTGAACAA GATTACCAGA 
CATATCAATC GCTGCATCAG GTATTAAGAT CGCTGGCCCG CTTTGGCTTC 
TGTTGAGAAA GCCTGAAGAA GAGATCTGAC AATTGTTGGT GGAAGGCGAG 
GTTGAAGAGG AAGGAGCATC TCCTCCATCT GTGATGCCTG AATAAGCT

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 7017235 [Map]; Strand: w
  - AT5G20730.2 - [+] show detail - Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-re...
    Distance: 0; Region: intron11 (CDS)
  - AT5G20730.3 - [+] show detail - Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-re...
    Distance: 0; Region: intron11 (CDS)
  - AT5G20730.1 - [+] show detail - Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-re...
    Distance: 0; Region: intron11 (CDS)
Flanking Genome Sequence: 13-1214-1 - 3-prime edge
```
GTGGATTGTG GCCAGCTCAG ACTCAGCGAA TGCGAACTTA TACAAAGGTT 
CGATTGTGCT CTGATCCATG CTTGTTGATA TTTGGGTTTT GTTTTCGGTT 
TGACAAATGT TAAATTATCC TACAGGTGCA AAAACGAGGC TCAGTGGGGA 
GATCAATAGA CGTCAACCGT TACAGAGGTT ACGATGAGCT GAGGCATGAT 
CTAGCGCGCA TGTTTGGGAT TGAAGGACAG CTCGAAGATC CTCAAACATC 
TGACTGGAAA CTTGTTTATG TCGATCATGA AAACGACATC CTCCTCGTTG 
GCGATGATCC ATGGGAGTAA GTAGAGAGCA ATTACTTTCA CACATCAGAC 
TGTTAGAAGT TCCATTATTT TTTTGCTAAC CTTTAAAATC GTGATTTTTG 
CAGGGAATT
```

AT5G20730.1

Model type: Protein coding
Short Description: Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
Curator Summary: Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.
Computational Description: NON-PHOTOTROPHIC HYPOCOTYL (NPH4); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1); Has 127290 Blast hits to 55954 proteins in 2093 species: Archae - 44; Bacteria - 12651; Metazoa - 44969; Fungi - 11875; Plants - 9571; Viruses - 386; Other Eukaryotes - 47794 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G20730.2

Model type: Protein coding
Short Description: Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
Curator Summary: Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.
Computational Description: NON-PHOTOTROPHIC HYPOCOTYL (NPH4); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1); Has 127440 Blast hits to 56170 proteins in 2083 species: Archae - 44; Bacteria - 12539; Metazoa - 44967; Fungi - 11870; Plants - 9838; Viruses - 384; Other Eukaryotes - 47798 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G20730.3

Model type: Protein coding
Short Description: Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
Curator Summary: Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.
Computational Description: NON-PHOTOTROPHIC HYPOCOTYL (NPH4); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1); Has 127441 Blast hits to 56171 proteins in 2083 species: Archae - 44; Bacteria - 12539; Metazoa - 44967; Fungi - 11870; Plants - 9839; Viruses - 384; Other Eukaryotes - 47798 (source: NCBI BLink).
Link: InterPro Scan - TAIR