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13-1214-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
vascular leaf (PO:0009025)
  • hyponastic (PATO:0002329)
    (Leaves::hyponastic)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7017351 [Map]; Strand: w
      • AT5G20730.2 - [+] show detail - Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-re...
        Distance: 0; Region: exon11 (CDS)
      • AT5G20730.3 - [+] show detail - Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-re...
        Distance: 0; Region: exon11 (CDS)
      • AT5G20730.1 - [+] show detail - Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-re...
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: 13-1214-1 - 5-prime edge
    CAATCCACCA CCAAGAACTC CAGCATCGTT GACAGCTAGA TCGTTCGAAA 
    TGGCGGGCAC ATTGGGGACA CCAAAAGATT GAGTTCTTAC AGCTGAAGTA
    GACATCTCTG TACCAATGTC ATTTGTCACT CCTCCATAGT TTGAAAGCAT
    GTTCTGAAGA TCTTTCTGGG AGTCATATCC CCTCGAGAGT AGCGTGTCAG
    GCACAAAGCC ATTATCAACA TTAGCTCCAC CGAGCAAGCT GTTCCTGGAA
    TCACCGTCAA GGCCAAAAGT TGGAGCCAAG AAATTTTGTT GTCTGTTGTT
    TTCGCCTCCA TCTAAACCGT AAGAAGTTCC AGAGGCAGAT GCTTCTAGTT
    GATGATCTGT TAAACTAGCT TTGGACTTTT GCTGACCCAC GAGTTCTTGT
    TTTAGCCGCA TATCGGATTT GCTGTAAAGA TCCTGAACAA GATTACCAGA
    CATATCAATC GCTGCATCAG GTATTAAGAT CGCTGGCCCG CTTTGGCTTC
    TGTTGAGAAA GCCTGAAGAA GAGATCTGAC AATTGTTGGT GGAAGGCGAG
    GTTGAAGAGG AAGGAGCATC TCCTCCATCT GTGATGCCTG AATAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7017235 [Map]; Strand: w
      • AT5G20730.2 - [+] show detail - Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-re...
        Distance: 0; Region: intron11 (CDS)
      • AT5G20730.3 - [+] show detail - Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-re...
        Distance: 0; Region: intron11 (CDS)
      • AT5G20730.1 - [+] show detail - Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-re...
        Distance: 0; Region: intron11 (CDS)
    Flanking Genome Sequence: 13-1214-1 - 3-prime edge
    GTGGATTGTG GCCAGCTCAG ACTCAGCGAA TGCGAACTTA TACAAAGGTT 
    CGATTGTGCT CTGATCCATG CTTGTTGATA TTTGGGTTTT GTTTTCGGTT
    TGACAAATGT TAAATTATCC TACAGGTGCA AAAACGAGGC TCAGTGGGGA
    GATCAATAGA CGTCAACCGT TACAGAGGTT ACGATGAGCT GAGGCATGAT
    CTAGCGCGCA TGTTTGGGAT TGAAGGACAG CTCGAAGATC CTCAAACATC
    TGACTGGAAA CTTGTTTATG TCGATCATGA AAACGACATC CTCCTCGTTG
    GCGATGATCC ATGGGAGTAA GTAGAGAGCA ATTACTTTCA CACATCAGAC
    TGTTAGAAGT TCCATTATTT TTTTGCTAAC CTTTAAAATC GTGATTTTTG
    CAGGGAATT

AT5G20730.1

Model type
Protein coding
Short Description
Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
Curator Summary
Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.
Computational Description
NON-PHOTOTROPHIC HYPOCOTYL (NPH4); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1); Has 127290 Blast hits to 55954 proteins in 2093 species: Archae - 44; Bacteria - 12651; Metazoa - 44969; Fungi - 11875; Plants - 9571; Viruses - 386; Other Eukaryotes - 47794 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20730.2

Model type
Protein coding
Short Description
Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
Curator Summary
Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.
Computational Description
NON-PHOTOTROPHIC HYPOCOTYL (NPH4); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1); Has 127440 Blast hits to 56170 proteins in 2083 species: Archae - 44; Bacteria - 12539; Metazoa - 44967; Fungi - 11870; Plants - 9838; Viruses - 384; Other Eukaryotes - 47798 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20730.3

Model type
Protein coding
Short Description
Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
Curator Summary
Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.
Computational Description
NON-PHOTOTROPHIC HYPOCOTYL (NPH4); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1); Has 127441 Blast hits to 56171 proteins in 2083 species: Archae - 44; Bacteria - 12539; Metazoa - 44967; Fungi - 11870; Plants - 9839; Viruses - 384; Other Eukaryotes - 47798 (source: NCBI BLink).
Link
InterPro Scan - TAIR