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13-1220-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 332781 [Map]; Strand: c
      • AT3G02000.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-1220-1 - 5-prime edge
    TACCTGACAC TGGTCTGCTT CGTATAGAGT CCCTGGCTTC TGAGAGCGCG 
    GTGGTGATCT TCAGCGTGAG CACGTGCTGC ATGTGCCACG CCGTGAAGGG
    TCTCTTCAGA GGAATGGGCG TCAGCCCCGC CGTCCACGAG CTCGACCTCC
    ACCCCTACGG CGGCGACATC CAGCGAGCCC TCATTCGTCT CCTCGGCTGC
    TCCGGCTCCT CTTCTCCAGG GTCTCTCCCG GTCGTCTTCA TCGGCGGTAA
    ACTGGTTGGA GCTATGGACA GAGTCATGGC TTCTCACATA AACGGCTCTC
    TCGTTCCTCT TCTCAAAGAC GCCGGCGCTC TCTGGCTCTG ATCCCTTCCT
    CTGCTTTCTT TTTTCTTTTC TATTTGAAGT TTTCTTGTAA GAGAATGTGG
    TGGAGGAAGA TTAGGAAACT AGTCAATGGC TGTAATGACA GGTTTTAGAT
    TATAGTTTGT AATTAGAGAG AGAGTTGTTT TAAGCTCACC TTTCTCTGTC
    TTCCTCTTCT TCATCTCTTA TTGATCTTTC GAATGCTCTC ATTAAATCAT
    AATAGTAAAC ACTTTGCATC TTTATTAATG TCCCCTGGAT C

AT3G02000.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Curator Summary
Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN).
Computational Description
ROXY1; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT5G14070.1); Has 1149 Blast hits to 1147 proteins in 188 species: Archae - 0; Bacteria - 38; Metazoa - 213; Fungi - 109; Plants - 748; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR