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13-1273-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20072453 [Map]; Strand: c
      • AT5G49480.1 - [+] show detail - Ca2+-binding protein 1
        Distance: 815; Region: intergenic
      • AT5G49490.1 - [+] show detail - AGAMOUS-like 83
        Distance: -2875; Region: intergenic
    Flanking Genome Sequence: 13-1273-1 - 5-prime edge
    CTTNGATAAA ACTAACAAAA TCGGTTATAC GATAACAGGT CGGTACGGGA 
    TTTTCCCATC CTACTTTCAT CATNGGGACA TGACTTTGGT GGACCGGATG
    AAAANCTTGG GACAACATCC CCATTAACTN ATATTGGNNA GTCCATCNAC
    NCANANTATG GTNTGAATAT ATGGCTTAGC TGAAAGTGTA TGTTCTATAT
    TTGATAAATC AAATGATTCT ATCTTCAAGC AAAAAAGATA AACACAAAAC
    ACCAAAATAC AAACACAACA TGCGTTAACA TATTCGGTCG AGTCAGATGA
    TTAAATAGCA CGATCCTTCC TTGCCCTTCA CGCCTGAATG CGGATACCAA
    TAAATCTATT AGAATCGAGG AAGAACATCA CTGGAAGCCA TGGCAGACGT
    AGATTGAATT GTGAAAAGTG AGAGTAAGCA AAGGAAGTAG AACACAGTTA
    AATGTGTTTT TCTGTCCTTT CTCTCTATAC AACCAATGAG AAAGTACCAT
    TGCCTTTTCA CTTTCTTTTG TTTTATCAAA CTAATGTTCC GGGATATGCC
    CATATAAATA TTTGATTTTT ATTTATTTTA ACTTTAAAAA TCATAGACGG
    CGAAATCTAC CCATCAAGAT ANAACCGTTT TCATCAAAAA CTTTGATTCA
    TCTACATGTT CATCGCAACA CTAAACAAAG GAAGACCTAC TCAAAGTACT
    TTTTACGAAT CTAAAATAAA AATTACTACA AACATGAAAG TTCTCTCCTT
    CAAATAGGCA TTTGGAANAG TGGTTGCATT GAAAAGATNT ATGGGGGCCA
    AATGCCCG
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19569800 [Map]; Strand: w
      • AT5G48300.1 - [+] show detail - ADP glucose pyrophosphorylase 1
        Distance: -440; Region: promoter
    Flanking Genome Sequence: 13-1273-1 - 3-prime edge
    ATTAAAACGG TNGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    GATAGCAGTA AATTGATTTG GTGGCCTCAG AGCTTTATTC ATATGACTAA
    ATAGTAAACA TAGTGCTTCT TTAGTTCTTT ACAATAAAAA AAAANCATGG
    GNCATCANGC NCTCTCTATC ACCNTCCCGG GNCGAAACCC ANNCCNNGCC
    GATTTNGCAA TGGGGTNCGG GATNGTAANC GGGTNCCCCT ATNTCATTGT
    AGGGATGNGC CGGANGGCCC GGGTNTGGAA NCNAGGAAGG NCCCCCGNCT
    CCCNGGGGAA NGGGGGANGG CCCNCCGTNT CCTTGATGAG GAANGGNGGA
    AGGTCCCCCG TNTCCCTGCA NAGGCCANGG NTANCNCGGC CCAGGTTTNG
    GCNNCGGNGG TNCCTNGTCA TCNGGCCCTT TCTTATCNCC ACCTTTTNGG
    NCACCGCCTT TTCCCTNNGN NCCCTTTCCG NCCCCTCCTT TNTTCTNGNN
    TTCTTTNTTT GGGGGTCCAA CNTTTGGGCN CNCTCNCAAN CNNNGGGAAC
    CCTACCTTCT TTTNNGAGTN TTNGGGATAA NAGGGANCNT TTNNNCTTNN
    ANCGCCGGGN NCCCNNTATN GGGTNCCGGG GACCNCCNTT TTTTTCCCCG
    GNGGGNCCCC CCTTTAAACC CTTNNAANCC NCCAAAGNNG GGNANNCTTT
    TTNGGGGAAA GGGNCTNTTA CCNTTAANCG NANCCGCNTN NGNNTNGNNT
    TNGCCNNGGG TNNNNNNNNG NNNNANNCCC NCNNNNAAAA ACNCC

AT5G48300.1

Model type
Protein coding
Short Description
ADP glucose pyrophosphorylase 1
Curator Summary
Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested.
Computational Description
ADP glucose pyrophosphorylase 1 (ADG1); FUNCTIONS IN: glucose-1-phosphate adenylyltransferase activity; INVOLVED IN: photoperiodism, flowering, starch biosynthetic process; LOCATED IN: heterotetrameric ADPG pyrophosphorylase complex, apoplast, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP glucose pyrophosphorylase large subunit 1 (TAIR:AT5G19220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49480.1

Model type
Protein coding
Short Description
Ca2+-binding protein 1
Curator Summary
AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl.
Computational Description
Ca2+-binding protein 1 (CP1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: hyperosmotic salinity response; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 1 (TAIR:AT5G37780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49490.1

Model type
Protein coding
Short Description
AGAMOUS-like 83
Computational Description
AGAMOUS-like 83 (AGL83); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell, female gametophyte; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT5G49420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR