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13-1273-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20072453 [Map]; Strand: c
      • AT5G49480.1 - [+] show detail - Ca2+-binding protein 1
        Distance: 815; Region: intergenic
      • AT5G49490.1 - [+] show detail - AGAMOUS-like 83
        Distance: -2875; Region: intergenic
    Flanking Genome Sequence: 13-1273-1 - 5-prime edge 
    CTTNGATAAA ACTAACAAAA TCGGTTATAC GATAACAGGT CGGTACGGGA 
    TTTTCCCATC CTACTTTCAT CATNGGGACA TGACTTTGGT GGACCGGATG 
    AAAANCTTGG GACAACATCC CCATTAACTN ATATTGGNNA GTCCATCNAC 
    NCANANTATG GTNTGAATAT ATGGCTTAGC TGAAAGTGTA TGTTCTATAT 
    TTGATAAATC AAATGATTCT ATCTTCAAGC AAAAAAGATA AACACAAAAC 
    ACCAAAATAC AAACACAACA TGCGTTAACA TATTCGGTCG AGTCAGATGA 
    TTAAATAGCA CGATCCTTCC TTGCCCTTCA CGCCTGAATG CGGATACCAA 
    TAAATCTATT AGAATCGAGG AAGAACATCA CTGGAAGCCA TGGCAGACGT 
    AGATTGAATT GTGAAAAGTG AGAGTAAGCA AAGGAAGTAG AACACAGTTA 
    AATGTGTTTT TCTGTCCTTT CTCTCTATAC AACCAATGAG AAAGTACCAT 
    TGCCTTTTCA CTTTCTTTTG TTTTATCAAA CTAATGTTCC GGGATATGCC 
    CATATAAATA TTTGATTTTT ATTTATTTTA ACTTTAAAAA TCATAGACGG 
    CGAAATCTAC CCATCAAGAT ANAACCGTTT TCATCAAAAA CTTTGATTCA 
    TCTACATGTT CATCGCAACA CTAAACAAAG GAAGACCTAC TCAAAGTACT 
    TTTTACGAAT CTAAAATAAA AATTACTACA AACATGAAAG TTCTCTCCTT 
    CAAATAGGCA TTTGGAANAG TGGTTGCATT GAAAAGATNT ATGGGGGCCA 
    AATGCCCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19569800 [Map]; Strand: w
      • AT5G48300.1 - [+] show detail - ADP glucose pyrophosphorylase 1
        Distance: -440; Region: promoter
    Flanking Genome Sequence: 13-1273-1 - 3-prime edge 
    ATTAAAACGG TNGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    GATAGCAGTA AATTGATTTG GTGGCCTCAG AGCTTTATTC ATATGACTAA 
    ATAGTAAACA TAGTGCTTCT TTAGTTCTTT ACAATAAAAA AAAANCATGG 
    GNCATCANGC NCTCTCTATC ACCNTCCCGG GNCGAAACCC ANNCCNNGCC 
    GATTTNGCAA TGGGGTNCGG GATNGTAANC GGGTNCCCCT ATNTCATTGT 
    AGGGATGNGC CGGANGGCCC GGGTNTGGAA NCNAGGAAGG NCCCCCGNCT 
    CCCNGGGGAA NGGGGGANGG CCCNCCGTNT CCTTGATGAG GAANGGNGGA 
    AGGTCCCCCG TNTCCCTGCA NAGGCCANGG NTANCNCGGC CCAGGTTTNG 
    GCNNCGGNGG TNCCTNGTCA TCNGGCCCTT TCTTATCNCC ACCTTTTNGG 
    NCACCGCCTT TTCCCTNNGN NCCCTTTCCG NCCCCTCCTT TNTTCTNGNN 
    TTCTTTNTTT GGGGGTCCAA CNTTTGGGCN CNCTCNCAAN CNNNGGGAAC 
    CCTACCTTCT TTTNNGAGTN TTNGGGATAA NAGGGANCNT TTNNNCTTNN 
    ANCGCCGGGN NCCCNNTATN GGGTNCCGGG GACCNCCNTT TTTTTCCCCG 
    GNGGGNCCCC CCTTTAAACC CTTNNAANCC NCCAAAGNNG GGNANNCTTT 
    TTNGGGGAAA GGGNCTNTTA CCNTTAANCG NANCCGCNTN NGNNTNGNNT 
    TNGCCNNGGG TNNNNNNNNG NNNNANNCCC NCNNNNAAAA ACNCC

AT5G48300.1

Model type
Protein coding
Short Description
ADP glucose pyrophosphorylase 1
Curator Summary
Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested.
Computational Description
ADP glucose pyrophosphorylase 1 (ADG1); FUNCTIONS IN: glucose-1-phosphate adenylyltransferase activity; INVOLVED IN: photoperiodism, flowering, starch biosynthetic process; LOCATED IN: heterotetrameric ADPG pyrophosphorylase complex, apoplast, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP glucose pyrophosphorylase large subunit 1 (TAIR:AT5G19220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49480.1

Model type
Protein coding
Short Description
Ca2+-binding protein 1
Curator Summary
AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl.
Computational Description
Ca2+-binding protein 1 (CP1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: hyperosmotic salinity response; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 1 (TAIR:AT5G37780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49490.1

Model type
Protein coding
Short Description
AGAMOUS-like 83
Computational Description
AGAMOUS-like 83 (AGL83); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell, female gametophyte; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT5G49420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR