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13-1278-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26499446 [Map]; Strand: c
      • AT5G66320.2 - [+] show detail - GATA transcription factor 5
        Distance: -1769; Region: intergenic
      • AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 956; Region: intergenic
    Flanking Genome Sequence: 13-1278-1 - 5-prime edge 
    CTCTCACACT CTCTGTCATA GCTTCTCTTA CTATTCTTCT TCTTCTTCTT 
    CTTAATTTGA CATTTCAAAA TTTAAAAGAA AAAAAAANGT CCANCAANCN 
    TAAANACCCC NTNTCAANAA NCNCAGCTTT NGCCGACGGA TCCGTCNNGG 
    CTAATTTGGN CATTNAATAT TAANCATNGT NNCAAAANAT TNATCTTCTN 
    AAATNATCCN TTTNATNGNC ANAATTANAG GGATTNANNA ATATCCGNGT 
    TTNAATTNAG GCAANAGGGG GANNATTTNC CNCCCTAAAT AATGGGNAAA 
    NCAAANCANC ANNGGATTAN CCGNNGGGGA ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26499562 [Map]; Strand: c
      • AT5G66320.2 - [+] show detail - GATA transcription factor 5
        Distance: -1885; Region: intergenic
      • AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 840; Region: intergenic
    Flanking Genome Sequence: 13-1278-1 - 3-prime edge 
    TGTGANANAG AGGAGCTGGA AAGTCCCACC GAGAATNGTT ANCCACTTTT 
    GAATCTTCCA TCTCCCATTT TTTTCTATGG AATGGATCGT ACCACCAATG 
    ATATGAATTT GTTCATTAAA AATAGAGAAA AAACAAAATT GACAGCGATT 
    TGTTAATGTA AATAAGAAAC ACTTGTTTGG TTTTATGCAT TAAGACATAG 
    AAAGCAAAGG AGACAACATA TCAAATTCGA AACCTTGGAG CGGGAAAATG 
    AAAATCATTC AATTTTGTCA CATACTGACC GTGGTAGACT ATTCAAACTA 
    TCTCACCTTC TTGCATTACG ATTTTTTTTT TTNAAATTTA AAAAAAAAGC 
    AAATTTTNTT TGTNTTTTTG TNTTTNAANC NANTTTGNGG ANNCAAAACT 
    NTTTAAAAAN ACTTCCCGAA NGGGAAANCT AAAANTTTNC NGNTTGANAC 
    ATNNNAGGNG GNGGTNNTNT ACCCANAANG NNNNNCTTTT GNTAAACCCC 
    AAAGNATNGA ATGAAGGGGG NCCCCTTTTC TTTNTNGGAA GGAACNCCCN 
    TTTNGTTTGG CCATNATCCA ATTNNTNNAN CCCNATTTGT TTGGGNTNTN 
    TNNNTTTTTN AAAANNGGGC CTNCCNAAGA AATNNTTNNT TTTNNTATTN 
    TCNTTTAATN AGGGCCNNNT TNAANATATG GNCCCCAACC TTTTNANNCC 
    CANCCANTTG NCGCGTNNAA GNTTANCANC CCGTGNNCNN GNTATNCCAN 
    CNNTTTCNTT

AT5G66320.2

Model type
Protein coding
Short Description
GATA transcription factor 5
Curator Summary
Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational Description
GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66330.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G15320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR