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13-1314-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 505310 [Map]; Strand: w
      • AT1G02460.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 13-1314-1 - 5-prime edge 
    GNNACGGNAA GANANCGGNT GGGCGTTCNA TGNCANCNCN GAGACCGAAC 
    CGGACNCACC TTGCCATGTT NNNGATNCTA ACTCCATTGT CAGAGNATNT 
    TATGACCGAA TCTCTAACCG TTATATTNGA GACACATGCT CGTGAGTTGT 
    GATTGCCCAA ACTTNCGATA CTGANAAATA GTTATTAATC AGGATCAATG 
    AGATAATTAA CAAATGTTTT TAATTTAGTT AATCATGATT TAAAAGAGAG 
    AGATAATAAA CCTAATTCCA TGGCCACCGG GTCCACNAGT TAGATTCCGT 
    NTATCAACGT CGTATGATCC GGAGCCAATC GATACACAAT CATCTCCTGC 
    AAAATGGATG TATGAATTNA ATTATTCAGA CAATAATCAT TCCTTCCTTT 
    TGTTNCTTAC TTTTTNAAAA AAAAACTTTA ATTTNATTCT AAATAAAGAC 
    ACGTTAAATA TATTAAAAGC CGGTTAGCCC ACTTAACCCA TCGGTTTANT 
    TAACCGACTT TANCAAANTC ACGNGCANAA TATATGTTAT ATNTNTNATT 
    TTTATANATA AATATATNTT TATNGGGGCG NGCACNCANA NNTTGNNTAN 
    ANTANNNNGN NAGGGNNNCC NNNGGGATAT AANNGNTANT GTGAGNGGGC 
    AACNNGNGTA TATANNTNTC ATATACNGAC CNANNCCANN NNATCTTANA 
    ACCNTGGTGN C

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 502741 [Map]; Strand: w
      • AT1G02450.1 - [+] show detail - NIM1-interacting 1
        Distance: -4225; Region: intergenic
      • AT1G02460.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 1932; Region: intergenic
    Flanking Genome Sequence: 13-1314-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TCCGACCGTT TTCATTACTG 
    CTTGTTGTTA AGACAAAAAG GTATATCGGT GAGTTCTCAT CAAAAGCT

AT1G02450.1

Model type
Protein coding
Short Description
NIM1-interacting 1
Curator Summary
NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression.
Computational Description
NIM1-interacting 1 (NIMIN1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of systemic acquired resistance, defense response to bacterium, negative regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: systemic acquired resistance (SAR) regulator protein NIMIN-1-related (TAIR:AT4G01895.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 35; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02460.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: stem, root, stamen, seed; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G01890.1); Has 5413 Blast hits to 5130 proteins in 651 species: Archae - 6; Bacteria - 1539; Metazoa - 261; Fungi - 1343; Plants - 1850; Viruses - 100; Other Eukaryotes - 314 (source: NCBI BLink).
Link
InterPro Scan - TAIR