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13-1397-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18686780 [Map]; Strand: w
      • AT2G45320.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -635; Region: promoter
      • AT2G45330.2 - [+] show detail - RNA 2'-phosphotransferase, Tpt1 / KptA family
        Distance: 0; Region: intron2 (CDS)
      • AT2G45330.1 - [+] show detail - RNA 2'-phosphotransferase, Tpt1 / KptA family
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 13-1397-1 - 5-prime edge
    CTTGTAAGTG TAATCGATCA ATACTGGATT CTAGATGTTA GAGAATTAGC 
    TTGAATTTTG AATCTATAAT GGATTGATAA TCAGGACGAG AATATTGCGA
    CATATGGCTA CTGAGCTTGA GATTGAACAT GAGAGGTGAT GGTTTTGTTA
    AAGTTGAAGA TTTACTTAAC CTGAATTTGA AAACTTCTGC AAATATTCAG
    TTAAAGTCAC ACACNGATTG ATGAAATTAG AGAGGTTAGT TTCATTTTTT
    TCACTTGTTT TTGTCAACGA GCATTTTCGA TTGGAGACGT TTTTGAGATG
    AGTTTGTGTA TGGTTTTCGT TAACTTGCAG GCTGTGAGAA GGGACAATAA
    GCAACGGTTT AGTCTCATCG ATGAGAATGG AGAGCTCTTG ATTCGCGCTA
    ACCAAGGCCA TTCGATCACG GTAATAGAAC TTGAACAATG AATCCTTAGC
    ATTTGGCTGT TTTCTTCTTC GTTGAGACAC AGTAGCACTA TGATTGGATT
    TTTGTTCTCC TAGTTTTGAT CAATAGCTTT AGCTTATGTC TTTGTGCGCA
    NACGGTTGAG TCAGAGAAGT TACTTAAACC AATACTGTCA CCANAAGAAG
    CTCCAGGTCC TACTAGGACA CATACTTGNN AAATTATGTA TNGNNATGNG
    TACTCNANTT CNTTTGANTT TNTGNNNGGC NNNGNGNGTN CNTGGANNTN
    TGG
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18686664 [Map]; Strand: w
      • AT2G45320.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -519; Region: promoter
      • AT2G45330.2 - [+] show detail - RNA 2'-phosphotransferase, Tpt1 / KptA family
        Distance: 0; Region: exon2 (CDS)
      • AT2G45330.1 - [+] show detail - RNA 2'-phosphotransferase, Tpt1 / KptA family
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-1397-1 - 3-prime edge
    CTTACAAGAG TCGTCCAAGT GCATCGATTC TATCCTTTCC GCCTCCACCG 
    TCGCCACGAC CCTGAGGTCT CCGTCGATCG TTATCTCTCT CATATCCTCC
    TCCTCTACCA CCGCTAAATC CATCAAAATC AAACACCAAA CCTTACATGA
    AAAAACGAGG GAAAATCAAA AGGGATTTTG ACTTTTCGAA TAATTTGAAA
    AATTAGAATT

AT2G45320.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 45 Blast hits to 45 proteins in 16 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G45330.1

Model type
Protein coding
Short Description
RNA 2'-phosphotransferase, Tpt1 / KptA family
Computational Description
embryo defective 1067 (emb1067); FUNCTIONS IN: tRNA 2'-phosphotransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation, embryo development ending in seed dormancy; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phosphotransferase KptA/Tpt1 (InterPro:IPR002745); BEST Arabidopsis thaliana protein match is: RNA 2'-phosphotransferase, Tpt1 / KptA family (TAIR:AT5G23600.1); Has 1059 Blast hits to 1053 proteins in 477 species: Archae - 87; Bacteria - 561; Metazoa - 92; Fungi - 143; Plants - 80; Viruses - 6; Other Eukaryotes - 90 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G45330.2

Model type
Protein coding
Short Description
RNA 2'-phosphotransferase, Tpt1 / KptA family
Computational Description
embryo defective 1067 (emb1067); FUNCTIONS IN: tRNA 2'-phosphotransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation, embryo development ending in seed dormancy; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phosphotransferase KptA/Tpt1 (InterPro:IPR002745); BEST Arabidopsis thaliana protein match is: RNA 2'-phosphotransferase, Tpt1 / KptA family (TAIR:AT5G23600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR