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13-1407-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11577410 [Map]; Strand: c
      • AT4G21810.1 - [+] show detail - DERLIN-2.1
        Distance: -215; Region: promoter
      • AT4G21820.1 - [+] show detail - binding;calmodulin binding
        Distance: -114; Region: promoter
    Flanking Genome Sequence: 13-1407-1 - 5-prime edge
    ACTAAAAGGA GTGAACACTA AAAGGAGTTT ATTGATATTC TAACGGTTCC 
    AGAAATAAGG TTGCAAATCT CGCCGCTTTA CTTTATTCGA TATGAACATC
    GTGACGTTTT AGTAAGTTGA AAACGCCGAA CGTTTTTAAG ATTTTTTTTC
    ACTGCAAAGA AACGCTGGCG TCAGATGCTT ATTATAATTG GTTCGTGTAA
    AACACGCGCT TTCTTATTCG TTGAGCTACT GTCACAACAG ATAAACATGC
    GGAAAAAAAG AGCGAACCTT TAACCAGTCG CTTTCGTTAA TTCAAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11577526 [Map]; Strand: c
      • AT4G21810.1 - [+] show detail - DERLIN-2.1
        Distance: -331; Region: promoter
      • AT4G21820.1 - [+] show detail - binding;calmodulin binding
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-1407-1 - 3-prime edge
    CTTTTAGTGT CACTCCTTTT AGTGTTTACT GTCTTTCGAA TTTTGAATTT 
    GAACAAACGA CTCTTTCTCT CTAACAAATC TCCGATGGAT GAAAACGAAC
    CGCCGTGCGC TTCACCGGTG CCGCCACGTA ATCCGACGTC ATCGTTACTC
    AGTGACATAT CCAATTTCAA AACGCCGCGG CGTACTTCCG TTGTGAATT

AT4G21810.1

Model type
Protein coding
Short Description
DERLIN-2.1
Computational Description
DERLIN-2.1 (DER2.1); CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599); BEST Arabidopsis thaliana protein match is: DERLIN-2.2 (TAIR:AT4G04860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G21820.1

Model type
Protein coding
Short Description
binding;calmodulin binding
Computational Description
binding;calmodulin binding; FUNCTIONS IN: calmodulin binding, binding; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Armadillo (InterPro:IPR000225), Calponin-like actin-binding (InterPro:IPR001715), Armadillo-type fold (InterPro:IPR016024), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin 2 (TAIR:AT5G43900.1); Has 3955 Blast hits to 2210 proteins in 242 species: Archae - 0; Bacteria - 4; Metazoa - 3047; Fungi - 265; Plants - 324; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink).
Link
InterPro Scan - TAIR