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13-1414-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 15673820 [Map]; Strand: w
      • AT3G43825.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-1414-1 - 5-prime edge
    TCNATGACCT CTTGATCTGN GGTNACGATG GGTACATGCT TCAGAAATTN 
    AAGGAGTNTC TNGGGCGTTG TTTCTCCATG AAAGATTTGG GGAAGANGAA
    ATATTTNCTT GGNATTGAAN TGAATCATGG ATCNGAAGGT NTGTTNATTA
    TCTNAGNGCA AGNACGCTAT NNANANNATN NCTGACAGNG GCAACNCTGA
    CNCTGNNNGA ACAAANNNAT NAACNNGGCT NCNNAGGATN GNGGANNNAG
    NNNATGNNNG AGAGAAATAN GCANGGGAGN AATNTGGGGC GCGNNNAGAG
    NTAAGGGGGG GGGNGACGGG AGGGCCGGCG NTGGNCGNGG GCGGGNGNNC
    GNGGCGAGNC NNNGNGCNCG GCNNNGNNGG CGGNNGNNGA CGTNGNNNNT
    NNCCNNNNGN GATTNNNNNA NNNACANAAN ANNNGNAANA ANANNGGNNG
    ANAGNNNCAA AGAANGAGCA AANANGNAAN NNNGATANAN ANCAAAAACN
    AANGGNGAGG GNNNGGNNAN NNATGNTAGA TACGGANGAN GNNANGNGGA
    GANAGAGNAA GNGNTATACG GGAGAGGNAA GGNGGNGGGC GANNNGCGGN
    NGGGNGNGCA CTCGNGANCC GANATTNNNA NAGAGNNACA NANNGAGANA
    GNNTAGNAGC GATANCNGAN GNGANGGGAN NGNNANAGAT GNGNNNACTG
    ATGGAGNGCN AGAANGNNNN NGAANGCAGG TNGAGNGACG GNGAGAGANA
    GGNNGNGGGG NGAAGGCCGN TGGNGNACNA CAGNAAAG
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 15673704 [Map]; Strand: w
      • AT3G43825.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-1414-1 - 3-prime edge
    GTCATCGACA TAGATCAACA CGCGAAGTTC AATGCCATTA CGTGCTTATG 
    AAAAGAGTGA GTAATCTTCA TAGGATTGAA CAAATCCAAA ACGCAAAAGA
    GAATCTGACA ATTTTTTAAA CCAACAACCG CAAAGCT

AT3G43825.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 8.3e-106 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR