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13-1433-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28856553 [Map]; Strand: c
      • AT1G76860.1 - [+] show detail - Small nuclear ribonucleoprotein family protein
        Distance: -803; Region: promoter
      • AT1G76870.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding tra...
        Distance: -697; Region: promoter
    Flanking Genome Sequence: 13-1433-1 - 5-prime edge 
    GGGATAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA TTGCATGATT CATTACTAAA TCCACAATAA GTTATTATAC 
    TCTTACACGT GTGCTTATTT TGTAGAAGCG TTACGATTCA CATTAAAAAG 
    GTTAAAAAGT GTATATCTTT TATTTCTTTT GTATCTTATC GAATTATCAA 
    CAAAAGTGTT CTTCTTCTTC TATATTACTT TGGATATATA AATTTAAATT 
    TAGTAGATAC AATGTGAGTC TTTAAAAACA CAACATTGTA GAATTTCATC 
    ACCAAATTAT ATCCAAGTTA TTATACTCTC ACACGTTTAT TTATTTTATG 
    GAACCAAGAA GCGTTACAAT TCGAATTAAA AAAGTTTTTA AAATTTATAT 
    ATAAATATAT TTAAATTTAA ACTTGTATAT AGCGATTAAA AGGTAATTGG 
    TATCACTTTT TAAAAAATAT AATTTTTTGT TAAAGACATT AGTCACAATA 
    GATAATCCTA TTTTTATACG TATACTTACT TTGTGAAACC GTCAAGCGTT 
    ACGATTTGAA AAAGTTATGA AACCATCAAG CGTTACGATT TGAAAAAATT 
    ATAAAAAGCT N

AT1G76860.1

Model type
Protein coding
Short Description
Small nuclear ribonucleoprotein family protein
Computational Description
Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G21190.1); Has 1289 Blast hits to 1289 proteins in 302 species: Archae - 306; Bacteria - 0; Metazoa - 397; Fungi - 221; Plants - 178; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76870.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi - 14; Plants - 127; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).
Link
InterPro Scan - TAIR