1. Home
  2. Mutant Lines
  3. 13-1439-1

13-1439-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 85893 [Map]; Strand: c
      • AT5G01215.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT5G01210.1 - [+] show detail - HXXXD-type acyl-transferase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G01215.2 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-1439-1 - 5-prime edge 
    CTTCTGATAC GTATTGCATA AACTCAGCAT CGTTCTCAAT CCCAGTCATA 
    GTCTCCGGCG CCAGAACTAC TTCCAGATCC ACGCTTCCGT TTCCTTCTCT 
    ACCGGGAAAC GCCGAGATCT TCCCGTCGAA TTTATTCGCT CCGCCGCTTC 
    TCACAGCTAA CGGTTTTCCC CATCCGAAAT CATTGTCGTA CATTGGGAAT 
    CTCGGCGAGC TCCCCATCGT GATCGAAGCT CCATCTGGAT TTCCGAGAGG 
    AAACAGCCTC GGATCGCTTT CCCAAGCGGC GATTCCACGG CGGACCGTCG 
    CGTCGTCGTG CGCCACCACG TTCCTGTGTA ACTGTTCGGC GGACCACCTG 
    AGATCTTTGC TTAGCAGATC TCCCGCAGAC GCCAACGTCG GTATGCTCTG 
    TATCGCGTTT CCGAAGTAGT ACGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28856634 [Map]; Strand: c
      • AT1G76860.1 - [+] show detail - Small nuclear ribonucleoprotein family protein
        Distance: -884; Region: promoter
      • AT1G76870.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding tra...
        Distance: -616; Region: promoter
    Flanking Genome Sequence: 13-1439-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTATCGTATA 
    AGGAAGTAAA AAAAAAACTT ATACTTANAT TTCCCTTGAC AATCATATCC 
    TTTTAATATA TAAAAAACAT NTAAATTTCA GTTATTTCAA AATTCAAATT 
    CATACTCTAC CCATAGNGAC TACCAAAATC AATCGTAAAT AAATAAAATA 
    AAAAANAAAN GGGGGGTCCA AATNTCTTCT GATNCATTGG ACATAAATAA 
    CTTTNGNGAT TTGTCNCTAA AAAANATTTA NAAACAANAC TCTCTTCTTC 
    TTCTTCCTCT AAANGTTTNG NCCGCCNCNC CCNTTGTCTC AGNGATCANA 
    GTTCGAGTAG NGATCTNTAA AACCCTANAC TCTNTCGTNT TCAATCGTTT 
    NAAAAAGGNC CGTTTAGTTT TANCATGAAA TTTTNTNTAA ANANAAGTTT 
    TTTTTTNCGN NTTTNGTNAN CNANNTTTNN TNNTTNNTCA ANTNNCCACC 
    CGGGNCCGTN ANCCNCCCNN GCCCCTTTGG GGGGGGGGNN NNNNCCNNGN 
    CGGGNNCGGN NNNGG

AT1G76860.1

Model type
Protein coding
Short Description
Small nuclear ribonucleoprotein family protein
Computational Description
Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G21190.1); Has 1289 Blast hits to 1289 proteins in 302 species: Archae - 306; Bacteria - 0; Metazoa - 397; Fungi - 221; Plants - 178; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76870.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi - 14; Plants - 127; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01210.1

Model type
Protein coding
Short Description
HXXXD-type acyl-transferase family protein
Computational Description
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT2G39980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01215.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G01210
Link
InterPro Scan - TAIR

AT5G01215.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G01210
Link
InterPro Scan - TAIR