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13-1448-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10548320 [Map]; Strand: c
      • AT3G28290.1 - [+] show detail - Protein of unknown function (DUF677)
        Distance: 0; Region: exon2 (CDS)
    2. Chromosome: 3; Position: 10566553 [Map]; Strand: c
      • AT3G28300.1 - [+] show detail - Protein of unknown function (DUF677)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-1448-1 - 3-prime edge 
    CGTGGCACAG TTTGAAAAAG ACAAAGAAAA TGATGTTGGC AAAAAAACGA 
    AGAGGTATGA AAATACCTTG AGGGAGCTGA AGAAGTTTGA AGCCATGGGA 
    AATCCTTTTG ATGGCGATAA GTTCACGACT CTGTTCAAGT TGATGCACAA 
    GGAGCAAGAA TCCCTTCTGG AAAGAGTGAA GGAGACTAAG GAAAAGCT

AT3G28290.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF677)
Curator Summary
Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.
Computational Description
AT14A; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G28300.1); Has 228 Blast hits to 220 proteins in 54 species: Archae - 6; Bacteria - 60; Metazoa - 5; Fungi - 4; Plants - 134; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G28300.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF677)
Curator Summary
Possesses a transmembrane domain and a small region that has sequence similarities to integrins from fungi, insects and humans. Is localized to plasma membrane and cytoplasm.
Computational Description
AT14A; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G28290.1); Has 228 Blast hits to 220 proteins in 54 species: Archae - 6; Bacteria - 60; Metazoa - 5; Fungi - 4; Plants - 134; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Link
InterPro Scan - TAIR