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13-1470-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20719187 [Map]; Strand: w
      • AT1G55490.1 - [+] show detail - chaperonin 60 beta
        Distance: -22; Region: promoter
      • AT1G55490.2 - [+] show detail - chaperonin 60 beta
        Distance: 0; Region: exon1 (5UTR)
      • AT1G55500.2 - [+] show detail - evolutionarily conserved C-terminal region 4
        Distance: -361; Region: promoter
      • AT1G55500.3 - [+] show detail - evolutionarily conserved C-terminal region 4
        Distance: -361; Region: promoter
      • AT1G55500.1 - [+] show detail - evolutionarily conserved C-terminal region 4
        Distance: -388; Region: promoter
    Flanking Genome Sequence: 13-1470-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCAAAAG 
    CACCTTCCAA GCGAGAGTAA GGAGATAAAC CTACTTCCTT TCCTTGCTTC 
    AGCTCCCCTT TTCTTATCCG GAAACCAAAA CTTCCGGTGA TAAAACCTCC 
    TTCGTCATCT CTCTACTTCT GTTAGTTTCT TAATCCTTAC TCTTGGAATA 
    GTTTATCCTC TGCATTTTTT AGTGCCACAG TTTATGTGTG TATGTTTTGT 
    TTGGATAAGA ATTTGTTGTA AGCTN

AT1G55490.1

Model type
Protein coding
Short Description
chaperonin 60 beta
Curator Summary
encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.
Computational Description
chaperonin 60 beta (CPN60B); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, systemic acquired resistance, cell death, response to cold, chaperone mediated protein folding requiring cofactor; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G13470.1); Has 34209 Blast hits to 34175 proteins in 8723 species: Archae - 804; Bacteria - 21846; Metazoa - 1741; Fungi - 1612; Plants - 841; Viruses - 2; Other Eukaryotes - 7363 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G55490.2

Model type
Protein coding
Short Description
chaperonin 60 beta
Curator Summary
encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.
Computational Description
chaperonin 60 beta (CPN60B); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, systemic acquired resistance, cell death, response to cold, chaperone mediated protein folding requiring cofactor; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G13470.1); Has 34209 Blast hits to 34175 proteins in 8723 species: Archae - 804; Bacteria - 21846; Metazoa - 1741; Fungi - 1612; Plants - 841; Viruses - 2; Other Eukaryotes - 7363 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G55500.1

Model type
Protein coding
Short Description
evolutionarily conserved C-terminal region 4
Computational Description
evolutionarily conserved C-terminal region 4 (ECT4); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1); Has 1490 Blast hits to 1324 proteins in 197 species: Archae - 2; Bacteria - 19; Metazoa - 721; Fungi - 248; Plants - 363; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G55500.2

Model type
Protein coding
Short Description
evolutionarily conserved C-terminal region 4
Computational Description
evolutionarily conserved C-terminal region 4 (ECT4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1).
Link
InterPro Scan - TAIR

AT1G55500.3

Model type
Protein coding
Short Description
evolutionarily conserved C-terminal region 4
Computational Description
evolutionarily conserved C-terminal region 4 (ECT4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1).
Link
InterPro Scan - TAIR