1. Home
  2. Mutant Lines
  3. 13-1479-1

13-1479-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4222530 [Map]; Strand: w
      • AT1G12400.1 - [+] show detail - Nucleotide excision repair, TFIIH, subunit TTDA
        Distance: 0; Region: exon3 (CDS)
      • AT1G12410.1 - [+] show detail - CLP protease proteolytic subunit 2
        Distance: -500; Region: promoter
    Flanking Genome Sequence: 13-1479-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA CATGTAGAGC AGATGATCCG CAGCGCCATT 
    TCTGATTTTA GAGATCAAAA CTCTTACGAG AAGCCCACTT CTTAGATCAC 
    ATCACATCAC ACTTGCTTCT TGTTTTTCTT TCATTTGATT CAAATGAATA 
    AAAACTTCAT TGAGATCGTG AGATTGGTTG ATATGGCTCA TGCTTTAATA 
    GAGTTAAAGT GAACTTTGTT GACAAATAAT CTCTCTGTAC CGGTTTAGTA 
    TCAGTCGGTT TTCTCTGGTT GTGTTGATTA CTTTGTCACT CTTTTGTTGA 
    ATAAACACGT TTGTTTGGTT ATTGTTCAAT TACTTGTAGT AGATAATAAA 
    CAGATTAAAG AATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4222524 [Map]; Strand: w
      • AT1G12400.1 - [+] show detail - Nucleotide excision repair, TFIIH, subunit TTDA
        Distance: 0; Region: exon3 (CDS)
      • AT1G12410.1 - [+] show detail - CLP protease proteolytic subunit 2
        Distance: -506; Region: promoter
    Flanking Genome Sequence: 13-1479-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTG 
    GTTGCACGAA CAAGTGAGTA CTATCAAGTA CATGAATTAT GAATTTCTGA 
    GACGGAGGCA TCGAATTGTT CATGTTCACT ATGAATTGTG TCATCGGAAT 
    ATCAGCTTGC AAACAAACAA AAGATACAAA GAAACAATGA ATGATTCAAT 
    TGTGTTCATC AAGATTTGCT TAGGAATCGT AACAACGGTA AGAAGTACCA 
    AGAGACGAAC ACTCCTTTGA TTGCATTAAC CATAAGTAAA ACCTGTAATA 
    CAAAACACGA ATAATCTGAG CTCAATTTTC ATCAAAAGAT GACCCAAGAA 
    CATCCTCGAT AACTCAGAAC ATAGATGAAT GAAAGATTAA TCCTTTGTTT 
    CAATTCAAGG ACCCCAAATT ACTAGATGCA ACGATTACAT AACTGGGGTT 
    TCGCTACCTA AACACCACAA CATAAACTCG ATTCCCAAAT CTTANGACTT 
    TAACGATTAC AGACCAAATN GAAATAGGAT GAAACCAGAT CAATTTGGTC 
    TAGAGATCAA CCACACACCT GTGAAACCAC ACGAAGGAAG ATTGGAGGAA 
    TCAATCAAGA GGGTAAGCNA TGTTTGAGGC AGCAGAAAGA AATCACCTTG 
    NTAACGACGA TTATTGGTCA CAGTCAAGGA GANAGGATTA GCCTTTANAG 
    GATAACCTAT TTCCAAANCT GGAACNGAGG GTTCGAAATC ATNTTTTGAA 
    GTTGTCGGNT ANTTACATCN ACTCA

AT1G12400.1

Model type
Protein coding
Short Description
Nucleotide excision repair, TFIIH, subunit TTDA
Computational Description
Nucleotide excision repair, TFIIH, subunit TTDA; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleotide-excision repair; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide excision repair, TFIIH, subunit TTDA (InterPro:IPR009400); BEST Arabidopsis thaliana protein match is: Nucleotide excision repair, TFIIH, subunit TTDA (TAIR:AT1G62886.1); Has 174 Blast hits to 174 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12410.1

Model type
Protein coding
Short Description
CLP protease proteolytic subunit 2
Curator Summary
Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
Computational Description
CLP protease proteolytic subunit 2 (CLP2); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: plastid-encoded CLP P (TAIR:ATCG00670.1); Has 13082 Blast hits to 13064 proteins in 2999 species: Archae - 2; Bacteria - 8275; Metazoa - 145; Fungi - 81; Plants - 1076; Viruses - 67; Other Eukaryotes - 3436 (source: NCBI BLink).
Link
InterPro Scan - TAIR