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Mutant Lines
13-1515-1

13-1515-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 12562776 [Map]; Strand: w
- AT4G24204.1 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: exon1 (5UTR)
- AT4G24204.2 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: exon1 (5UTR)
- AT4G24204.3 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT4G24210.1 - [+] show detail - F-box family protein
  Distance: -777; Region: promoter

GCTAGGAGCT AGAGGGGTAC TCGCAGTTAT CCGATGGTAA CTTGATGGAA 
TTTAGTTTAC CGGAAGAACA TATATAGAAG CTGCAGACAT TTTGAGATCG 
TGGCATCGAA CATTTTCGAG AGAAAAGAAT GATCCAGTGA AGATAGAAAT 
GATTTGTTCT CATCTGAAGT TATATTGAAT TTCTTATTGT TTGTTAGAGA 
GCATTAAACA AATGAATTTC TGATTAATTC CAAGCAATTG TCATCACTCT 
GACAGTATAT ATAGATTGTG TCAAAAGACT CGTCGTGCAA TCCATATTTA 
TTAATTTGAT CAGAAAAAGA GGCAAAATAC AAGTTGCTGA CACAAACTTA 
AAAAGAAAGG TACAGTACAA TTTCCTAACT CTGATTTAAT AATACCTATT 
TGTTAAAAAG GACAATTCAA GTGAGAAAAT GAAAAGGCAC CCAAATAATT 
CACTCTGTTT AAGTCCTAAA CGACTGATTC TTTTATCTGA AAATACGTGA 
TGCTAAATTA GTCAATAGTT GAAATAAGAT TTAAAAAATG GATTATCCGT 
TAATTCACAA AAATTCCTAG AGGTCTCTCT GGTACATNCA ATGAACACTN 
TTTTTAATAG TTGAAAATAA ACATTTGGGA NGAACTAANG AAGAAACAAC 
NTTTATAAGA TGGGGCTNGG GCTTTTNGNG GGATTTGGTT T

3 prime edge [+] show sequence

Chromosome: 4; Position: 12562660 [Map]; Strand: w
- AT4G24204.1 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: intron1 (5UTR)
- AT4G24204.2 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: exon1 (5UTR)
- AT4G24204.3 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: intron1 (CDS)
- AT4G24210.1 - [+] show detail - F-box family protein
  Distance: -893; Region: promoter

CTCCTAGCTC TACTCAATTT TCTATATAAA AAAAAAANCT TGNCAAANCC 
ATGGATTAAT ATNTNTNTNC AAGTAACTNG TNTTTTGCAG GANNAGTNCN 
TNCAANGGNC CTNGGGGCTN TCCTTCTNAN CTANAGGGGG GATTNATNTN 
ACAGTTTNGG GTNCTATNTT TCNCCCATNT TNNTNTAATT ANCATNNGGN 
GTNCTATTNN TNTTCAANGN AAANCTAATT NGTTGGTTTT TTNGTTTTNG 
TNATNGTTTC NCAGGGACAA TAANGACAAT NNCTTNTTNG GTNTTNAAAT 
NCCTGACCAA ATGNNACNTG GNGGATNACC CNCANNGGCT NCCNTNGGGG 
GCAAAAAAAA AANTCNCCNC CGTTNGNACC CCCCCGTTNA NNAATGANTC 
NTNGGNGGTA NCGGGGAAGG GAAATNTAAA ANCGGNGTCG TTNACCNCGT 
CGNATNATGN GNNCTNCNCA ACNCTGGGNG TTNTNTNCTT CNNGNANCGT 
AAAAACTGTT TNTTTGTNCC GGGGGGNNAC TNTNCCNCTT GTCNNGGTTG 
NGCNCAAAGG ATNTTGTCGN AAAAAANTAA GGGGNGTCCA ATTTNCCAAA 
GGGGGANNCC CCAAATCAAA AAAATNANNG TNGAAAAAGC TACCANCCCG 
GGCCGTNNAC CACCGGNCCC NTTNNNGGGG G

AT4G24204.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G38185.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G24204.2

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G38185.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G24204.3

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G38185.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G24210.1

Model type: Protein coding
Short Description: F-box family protein
Curator Summary: F-box protein that is involved in GA signaling. Regulates seed germination. Component of E3 ubiquitin complex. Interacts with DELLA proteins.
Computational Description: SLEEPY1 (SLY1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G48170.1); Has 122 Blast hits to 122 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 9; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR