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13-1528-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 74862 [Map]; Strand: w
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon2 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-1528-1 - 5-prime edge 
    GTCACCGACA AAAGGTTCGA ACAGTGGCCG CATCTGACCG TCACCGTCTT 
    GAACAAACTA CTCGGAGGAA CACTCACCTA CCAATTAATA TCACACATTA 
    ATTAACTAGT AATTCATGTG AAACCCTAGC TAGAGTTATA AATTTGAAAT 
    ATTGAGATGA GATATAAGAA TAATCCAAAT ATACAGCAAG GACAGTGTCG 
    CAGAAGCTGC AATGGACGTA ACAGAGCTGG TCCGTAGATG AGAAGTGGTC 
    CGGTGGAAAA GCTGGAGATG AGGAGGACGA CATGGACATG CTCGACATGG 
    AGTCTTTTTC TTGATTTAAA ACAAAAAAGG AGTAAGAGAG AGAGGAGGGC 
    TTTGATTTGA TTGAAAAGAT ATGACTGATC GATGTTCAGA TAGAAGTAGA 
    TTCTCCTTCC ACCACACCCT TTTGACAATT GTGTTTAGTG TTGGGTGATG 
    AGCAGTACTT TATAAATGTC TTGTACTTCT CCAGAAGTTG AAGTCCAGAG 
    AGAGAAGGAA GAGAAAGAAC GGTGGAGAGG AAGATGTGGT TTAGAGAGAG 
    AGAGAGAGAG AGATNTCTNT TTATGTAAAT ATGAAGAGAC NCTGTCCCTA 
    AACAANTTGG NNACATGTGA TGAAGANGCC NTTGTANANA TAAGCTGCAT 
    CCCTGCNTTC TTATTTACTA CCTTTTGANC CGGG

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR