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13-1530-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19242408 [Map]; Strand: w
      • AT2G46810.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 13-1530-1 - 5-prime edge 
    GATAACGGCG GCGATTCGTC AGATTTTCGA CAGCTGATTG ACTAATCCAA 
    GTAAAAAGTA AAATAAAAAA AGAAACGTTT ACTTTGGTAA CTTCGTTTTC 
    ATGATTAAAT TCTTTATTTG GTCGTATGTG ATTGGAGTCT TCTCGGCATG 
    GAACTTGACT TTGGTTTTAG GGTACTAGTC TCTACAGAAG CTGTGGTCCT 
    TCTTTGGATA GATTTATAAT GAAAGTTTGA CCCCTCTCTC TTTTTTTATT 
    GTCTTTTTGT TTTGCTTTTG CCTCTCTCTC GGGGTTTTGA CTTTTGTATC 
    ATAAAACTAG AATATAAAAG TTTACAAATT ATATTTATCT ATAAAATATT 
    TTTATTTTAT AGTTTACGAT TGTTATTAAG TAACGTCCTC TTAAATTCGT 
    CCCGCCAATC TGTCCCGTAA AAAAAACTCA CTGATTTTAT TTATGATATG 
    TTTATGAATC ATTGTCTAAA TATTTTTTAA TTTTGTAGTA ATTAAATGCT 
    ATCTAATATC TCTGCGATTT GATGATTATA ATCGAATTAT TATAGTCATG 
    TAGAAAAACA ATATCAAAAA TGATAATTTT TGTAGTAATT AAATGATATT 
    AAATATTTCA NAAGTTTTAT TTTTANTAAC TAATCGGNGT AGTTAATGTG 
    GAGAGATTTT GGGGAAGATT ATCAAATTTT TAAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19242292 [Map]; Strand: w
      • AT2G46810.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 13-1530-1 - 3-prime edge 
    CCGTTATCTC ATCCGCTGAT CCCAAATTAC ATTCATCTTC CATCTGAGCA 
    ACAAACAAAA AAGATTGAAT TTTTTCACCA TTGTCGATGA TTTTGAATAA 
    TGGGTTTTTT GTTATATAAG TAAGTACCTT GAGGTTGAAG GAATAAGAGA 
    CAGATGTATT GGTCGGAGAT GTGATGTTGA GATGAAGAAC AGTGAATCGA 
    AGTTTCTCCA GCAATATGAT TGATCTGAGA AGTTGTCCTT GTTTCCTCGT 
    ACATTGAATT TTTAGGTTGA CGTGACTCTC TATCACTGTG GCTTCGATTT 
    TGAGTTTGCT ACTTTGTTCT TCTTTATTAC TCGCACGCAA CTTGTTCGAC 
    GAAATGTTCC TGAGACTGTT ATCTTCTGGA ATTTGCTCTT TGTTATCATC 
    ACTCTGTTGA CTTCTCTTTT GTGCTTCAAG GGATTGCAAC TGTTGCTCTA 
    GGATCTTTAC GAAGTCTATT GCTCCTCCTA CTATTGACGC TTGGTCTCCC 
    TACGAGAGAT ATTAGTTAAG AAAATTCGAC ATTTGATAAA GGTTGGAACT 
    TTGATTTGTG GGTTTTGTTT ATTATACCCT CTGGATGTAT GAAGATGGAA 
    TGATGGAGCG GAGTGAGTTC AAATGAACGT TCATTTTGGC GTCTGCGGTT 
    TCGTTCAACC GCAATGTGTG TCATTCTTTG ACTCTCTATC TCTTCTATGT 
    CCTTTGGG

AT2G46810.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G61950.1); Has 1496 Blast hits to 1481 proteins in 142 species: Archae - 0; Bacteria - 20; Metazoa - 45; Fungi - 33; Plants - 1336; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Link
InterPro Scan - TAIR