1. Home
  2. Mutant Lines
  3. 13-1535-1

13-1535-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3355707 [Map]; Strand: c
      • AT1G10230.1 - [+] show detail - SKP1-like 18
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-1535-1 - 5-prime edge 
    TCCTCCATCA TGTGCACTAT GATCAGAAAC TTACGCGCCA CCGCTTCGTC 
    GATCTCGAAA GACTCGCCAT CGGAACTCGT CAACAAAATC TTGTTAGAAG 
    ACATGGTTAG ACTCGCAACC GCTTCCTCGA TCTCTGATGA TTCGCCGGCG 
    GACACAATCT CTTCGGAAGA AGAAGCCATT GTTATAAGGC AATTGAGTAA 
    TCCAGAATAA ACCCTTACAA GTAGGGGAGA AAAGGAAATA TAATGGATCA 
    GAATTATGGG CCTAAAGATT TCATAAAGCC CAAACAACCT ATACGGCTGT 
    ACTCAACAAG TCCCACTCAT CTGATTCTAG AACATTCTGA AGAGAAATCC 
    AAAATGGGAT CATATTGATT TGGAACCGGT TTGTAGAAAA CCGATCAAAC 
    TAAAAAATAT CTTCGTTTGC AGAGAAACGT AACTAAACAT AAAAACTTGT 
    CTTTTGCCAA CATTCATATA GTATAATGTA CCGTCTTGTT CTATGGTCGT 
    GAAACACATC AAACCAATAT CAAATACTTT GTTTTGTTGC CGATTTGGAA 
    AGNNNATTGG ATATCTTCTA ATCTTNTAAG CTNNANNNNG GGCCGNNNAC 
    CNCCCCNNCC C

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3355823 [Map]; Strand: c
      • AT1G10230.1 - [+] show detail - SKP1-like 18
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-1535-1 - 3-prime edge 
    ATGGAGGATA ACTGCGCCGG TGAAGCANTT CCGCTTGAAA ATGTCACCGG 
    GGATATCCTC TCCAAGATAA TCGAGTACGC AGAAGATGCA CGTCAATGAA 
    CCTAGTGAAG AAGACGAAGA CGAGGAGGCG AAGAAGAATC TAGACGTCGT 
    GGGACGCGTA AGTTCATGGA AAAGCTAGAT CTGGAGACCA TCTTCAAAAT 
    CATTCTCGCT GCCAACTACC TAAACTTCGA AGGACTTCTC GGTTTCGCTA 
    GCCAGACGGT TGCTGATTAC ATCAAGGACA AAACACCAGA GGAAGTACGA 
    GAGATTTTCA ACATCGAGAA CGATTTCACG CCTGAAGAAG AGGAAGAGAT 
    TCGCAAGGAG AATGCTTGGA CTTTTAATGA GTAATCCAAC TTTAGGGTTT 
    GCAGAATTTC GTTTCGAATT GCACAATTTA GGGTTTCTCT TCTCCCCCCT 
    CTTAGATTTC GTGAATGGGT TCATCTTTTC GTTATCGACT TGGTCTCAAG 
    TAATATTCTT TGTAGATTGA CCAATGTTGT TCTTGCTCTA TTAGCGTTCT 
    AATTCGATTC TCGATCTTGT TCAAAAGCCT AAAAAAAATA ATC

AT1G10230.1

Model type
Protein coding
Short Description
SKP1-like 18
Computational Description
SKP1-like 18 (SK18); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 15 (TAIR:AT3G25650.1); Has 1421 Blast hits to 1417 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 533; Fungi - 174; Plants - 532; Viruses - 11; Other Eukaryotes - 171 (source: NCBI BLink).
Link
InterPro Scan - TAIR