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13-1561-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1690942 [Map]; Strand: c
      • AT2G04810.1 - [+] show detail - Protein of unknown function (DUF295)
        Distance: 976; Region: intergenic
      • AT2G04820.1 - [+] show detail - transposable element gene
        Distance: 2635; Region: intergenic
    Flanking Genome Sequence: 13-1561-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAA GNTTCTTGGA CCAAGAACAC 
    AAAGAACAAG TCGAAAAGTC AACACACCTT CCTCTTAAGA AGTGCAGAAG 
    CACAAATCCA AGAGACTCTT GATCAGTTCA TCGACTTTGC TCAGTGAAAG 
    AGAAACCAAA ATATATGAGC AAAGACGGTT TACNTTCACA TAAGGAGATA 
    AAAAAATTGG CAGTATTCAC TAGTTCAGGA ACATATAAGA TTCTTAATGC 
    AGTACCAATA AATATCACAA TCAATTCAGG AACATATAAA ACTTCTCTTG 
    CAACAAAAAA ATAACAACCA CCTCATATTC AACACTAGAC CAGACACACT 
    CTGTTTTTCA AATCTCAACG CATCAATCAA CTCTAAATAA TTTGTATAAA 
    CCGTTGGCGA AGTTTTGTTG AAAGATGAAA GATAACATAT AATACTTGTG 
    AAATCATGAA ACTTTTGTGT CAAAGCTGAA AATAAATAAA AGAGCACGAA 
    GATGGTTCTT CTATATATAT CTACATTAAC TCTTACTACC ACACAGAGGA 
    GAGGCGAAAG TAAGATAGCA AAGAGGAGCT TAAGAAGAAA AACAAGCAAT 
    GAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 63114 [Map]; Strand: w
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: -296; Region: promoter
    Flanking Genome Sequence: 13-1561-1 - 3-prime edge 
    CTCACAATAT TATGCATAAC CCTATTACAA AGATGATCAG TGTTTACATA 
    CAACTGTAAA CTTTTTCATT CTCATTTAGT CTCATTGTAT CACCATTCAT 
    GAATT

AT2G04810.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF295)
Computational Description
Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT2G04840.1); Has 335 Blast hits to 324 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 335; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04820.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.8e-214 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G00160.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR