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13-1571-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 259702 [Map]; Strand: c
      • AT1G01700.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 2
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 13-1571-1 - 5-prime edge 
    TNTATGGNAG CTCNGCACNA NNCAGCGGNT CCCAGNANTG GCGCGNATCT 
    CNNAAGGTNC NACGCTANNG ANGCCNTCNG AATGANCANN CCATGCCGCC 
    GACGACCNGT GNCANTGTNT TATTGAATAT TATAACAATT NATGGTTTGT 
    GGTTTGCAGG ATGTTGGAAA AGCTGTGTTA GAGAGTTATT CAAGAGTTCT 
    TGAAGGTTTA NCTTTTAACA TAGTTGCTNG GATTGATGAT GTTCTTTATG 
    TAGACCAAAC AATGAGAGGA GAAGAATGAT GAGTATAATT ACTTTTAATT 
    TCTTCTACCT AGTAAGATTC AAATTGAAGT AAAATCATAT TAAGAATTGT 
    TTTCCTTATG TAAGAAAGAC GAACGCTGTA TATAGATTAT NTANATACCG 
    GGAATAATAT TAGTGGGGAG AATTTAGACA TTTAGTTATG NTTTAAAACA 
    NGTGTNTAAG ANTTAAATAA AAGGNTANTT NTAAAGTATT TATANATAAT 
    ACTAAAANCA ANGTGCTAAA NTTTNAAATT ANNTGNAAAC CNNTATTAAN 
    CGNNTAANAT CTTCTTAAGT CTTAACGTGN NGCNCNCAAA TNTGAAATNC 
    ATCATNGNNT GACTNAANTN TTTGTTTNAG AAGAANGAAG ATGAGNCGAG 
    TTTCNNNAAA AGAACACNTN TGAAAGTNTC TGCAAAATNA AAAAANNAAA 
    NACNNGGTNG NGNNATNAGG AANAAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 259794 [Map]; Strand: c
      • AT1G01700.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 2
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 13-1571-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATAGTTCTTG TCACTTCTCT CTGTAATTGA CATTAAATCT TTCACCATAT 
    TCCATGAAGA CTTGGAATTG TTAAGACAAG CT

AT1G01700.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 2
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 2 (ROPGEF2); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 3 (TAIR:AT4G00460.2); Has 308 Blast hits to 304 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR