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13-1578-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23399891 [Map]; Strand: c
      • AT3G63350.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-1578-1 - 5-prime edge 
    CTACTAGCTA GCTTGTTTCA CCAGCCATTA TTATTATTGA GCATAATTAC 
    TTAGTACTAA ACTATCCAGT GAACAAGTAA TTCACAAATA GACACATTGT 
    TTAACCTTTT GCAGTAATTA AAGGCCGAAG GCATTGTTGA GTTCCTCCAA 
    GACATAAGAT TAAGGGAACA CTATAGTGAA AAAAAAAACA AAAAATNCAG 
    TAAGGTCGTT TAGNGGANAA ACAGANATAC NCACATAAGT GTTAAGTTGT 
    CTGACAAANC TGGAAAAATT GTTGGGCTTG AAGTTTAAAG CNAAATATNG 
    CCCAAAAGGA AGGGGGATAA CAANCCGGGG CCTNAACCCC CGGCCCNTTT 
    AANNNGG

AT3G63350.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Curator Summary
member of Heat Stress Transcription Factor (Hsf) family
Computational Description
AT-HSFA7B; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to high light intensity, response to heat, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root, pedicel, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A7A (TAIR:AT3G51910.1); Has 2113 Blast hits to 2100 proteins in 228 species: Archae - 0; Bacteria - 6; Metazoa - 325; Fungi - 481; Plants - 785; Viruses - 0; Other Eukaryotes - 516 (source: NCBI BLink).
Link
InterPro Scan - TAIR