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13-1610-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19834945 [Map]; Strand: c
      • AT1G53180.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 2050; Region: intergenic
      • AT1G53190.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -2165; Region: intergenic
    Flanking Genome Sequence: 13-1610-1 - 5-prime edge 
    GATTAATGCC CAAACGAGAT CATTTTGTTA TCTTATAAGC ATGACTTTGT 
    TCCACTATCG GTTTTGATAC TTGCGATTGA AGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19835061 [Map]; Strand: c
      • AT1G53180.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 2166; Region: intergenic
      • AT1G53190.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -2049; Region: intergenic
    Flanking Genome Sequence: 13-1610-1 - 3-prime edge 
    CATTAATCAA ACTACACTTT TTTGTTGCTA ACTGAATTTT TATTATTTCA 
    TTCATTTTTA AAAACTATAT GTTAAACTAT TGTTTCTATA GGCACCATGT 
    GTGTAATCCA TGAGTTTATA TATATAGGAT AGGATTGGTG GTATAAAGCA 
    ATTAAAGTTT TTTTTATTGT AAGTAATAAT ATTAGAAATC ATTAAATCCT 
    ATTAGATAAT ACCAATCAGT GAAAAATAGT AAAATGGTGT TGAAGTGATA 
    TGAAATAGTG GTACAAAATA TATGGTTATG GATGGTGGTA TCGCTTTCGT 
    TTTCGTTCTA CCGCTTTCAT TGTATTGTTT ACCTACAAAT CGCTTTTTAT 
    TTTATTTTTT CTGTTCGTTA ACTGATATTT TTCTTACAAT AAAGGACGTT 
    AATTGATAGT TGTTCAAAAT TTTCCCGATG TGGCAATCGA ATCATTAATC 
    TGACTGACTA AATACTGACG AAAAAGAGAA AAAAAAAGAA AAGAAAAGAT 
    TAAAAGAGCT TATNCTNTTC GNGGTTTTAA GACAGTANAA ANAATCTGAT 
    CCAAACTCTA CNCTTGGAAG CANTGTTNTA ACCCCAAATT TNACATATAC 
    TGTATTATAT CCGGNATGNN CCTTTTATTG GCGANGNNCG GGAATTNGGT 
    TTTAANCTTG GGCCTTTTTT GCANCNGGGG ATTTTCCNAN NCATCCGCTA 
    NNGG

AT1G53180.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15115.1); Has 58 Blast hits to 56 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53190.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G15070.2); Has 8436 Blast hits to 8420 proteins in 276 species: Archae - 0; Bacteria - 0; Metazoa - 2403; Fungi - 639; Plants - 3969; Viruses - 29; Other Eukaryotes - 1396 (source: NCBI BLink).
Link
InterPro Scan - TAIR