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13-1677-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30129338 [Map]; Strand: c
      • AT1G80080.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G80090.1 - [+] show detail - Cystathionine beta-synthase (CBS) family protein
        Distance: -766; Region: promoter
    Flanking Genome Sequence: 13-1677-1 - 5-prime edge 
    CTCGCACGGA GCCTGACGAG CAAGACGCCG TCTACGACAT TATGCGTGCG 
    ACCGGCAACG ACTGGGCTGC CGCGATTCCA GACGTTTGCC GAGGGAGATG 
    GCACGGGATC GAGTGTATGC CGGACCAGGA TAACNGTCTA CCACGTGGTC 
    TCTCTGTCGT TCGGAGCGCT CTCAGACGAC ACGGCGTTTC CGACTTGTGA 
    TCCACAACGC TCTTACGTCT CTGAGTCCCT CACGAGGCTC AAACACCTCA 
    AAGCCTTGTT CTTCTACCGA TGTTTAGGCC GCGCCCCACA GCGCATACCG 
    GCGTTTCTGG GACGCCTCGG CTCGAGTCTG CAAACGCTGG TTCTGAGGGA 
    GAATGGTTTT TTGGGACCTA TCCCTGACGA ATTGGGCAAT CTCACCAATT 
    TGAAAGTTCT TGATTTGCAT AAAAATCACC TCAACGGCTC CATTCCCTTG 
    TCGTTCAACC GGTTCTCCGG TTTAAGATCG CTTGATTTGA GTGGTAACCG 
    GTTGACTGGT TCCATTCCCG GTTTTGTTCT TCCGGCGCTG AGCGTTCTGG 
    ATTTGAACCA GAATCTTTTA ACCGGACCGG TTCCACCCAC ACTCACAAGC 
    TGTGGATCGT TGATCAAAAT CGATCTTACC GAAACAGAGT CACTGGTCCT 
    ATCCCAAAAT CGATTAACCG GCTCAACCAA TTANTGCTTT TGGATTTGAN 
    CTNTACCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30129454 [Map]; Strand: c
      • AT1G80080.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G80090.1 - [+] show detail - Cystathionine beta-synthase (CBS) family protein
        Distance: -650; Region: promoter
    Flanking Genome Sequence: 13-1677-1 - 3-prime edge 
    CGTGCGAGCG CCGTCATTGG TCATCGTGAA TCCAGTTTGT GGGCCGTCGA 
    TCAGAGCAGA TGGGGCCGTC GAGTCGGAGG TGATCACAGT GAAAGATCTG 
    ACCAACGGAG AAACTATAGA CAAGACAATG AATATTTGGC GGAAGAATT

AT1G80080.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Curator Summary
Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.
Computational Description
TOO MANY MOUTHS (TMM); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 29 (TAIR:AT2G42800.1); Has 88991 Blast hits to 28047 proteins in 1079 species: Archae - 16; Bacteria - 3330; Metazoa - 23111; Fungi - 805; Plants - 56845; Viruses - 0; Other Eukaryotes - 4884 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80090.1

Model type
Protein coding
Short Description
Cystathionine beta-synthase (CBS) family protein
Computational Description
Cystathionine beta-synthase (CBS) family protein; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) protein (TAIR:AT1G15330.1); Has 517 Blast hits to 517 proteins in 144 species: Archae - 0; Bacteria - 47; Metazoa - 83; Fungi - 146; Plants - 195; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR