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13-1698-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 386016 [Map]; Strand: c
      • AT4G00900.1 - [+] show detail - ER-type Ca2+-ATPase 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-1698-1 - 5-prime edge 
    CTAAGGAGAA AGGCAAGCCT TTATGGCATC TTGTATTGGA ACAATTCGAC 
    GATACGCTTG TGAAGATTCT TCTCGGTGCT GCGTTTATCT CTTTCGTTTT 
    AGCCTTTTTA GGTGAAAGCG AGGAACATGG CTCAGGTTCA GGGTTCGAGG 
    CCTTTGTTGA GCCTTTTGTG ATTGTTTTGA TTTTGATTTT AAACGCTGTG 
    GTTGGTGTGT GGCAAGAGAG TAATGCTGAG AAAGCACTTG AGGCTCTTAA 
    AGAGATGCAA TGTGAATCTG CAAAGGTTTT GAGAGATGGG AATGTGTTGC 
    CTAATTTGCC TGCTAGAGAG CTTGTTCCAG GGGATATAGT GGAGTTAAAT 
    GTAGGAGATA AAGTCCCTGC TGATATGAGA GTTTCCGGTT TGAAAACATC 
    CACTTTAAGA GTCGAGCAAA GCTCGTTAAC CGGTGAAGCA ATGCCGGTTT 
    TGAAAGGAGC GAATCTTGTA GTTCTGGATG ATTGTGAACT GCAAGGGAAA 
    GAAAATATGG TTTTCGCGGG AACAACGGTT GTTAACGGAA GCTGCGTTTG 
    CATTGTGACG AGTATCGGTA TGGATACNGA GATCGGGAAA ATCCANAAAC 
    AGATTCACGA NGCGTCGCTT GAANANAGCG ANACTCCGTT AAANAANAAG 
    CTANACNANT TTGGGAGTAA ATTGACTACA GCTNTTTGCA TTGNCTGGGT 
    CCTGGGGGGA N

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 386132 [Map]; Strand: c
      • AT4G00900.1 - [+] show detail - ER-type Ca2+-ATPase 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-1698-1 - 3-prime edge 
    CTCCTTAGCA AGCTCGTTAA AACCGTACTT TTGACGGCGG ATTTGGACAT 
    CTTCGCTAGT TAAACCCTTG TCTAATCTTG TCTTGTACTC TTTCAAACAT 
    TGCTCAACAG ACCAAGACCA CGCCGAGAAC GACTTCTCCT CCTCCATTGG 
    TTCAAAAGCT

AT4G00900.1

Model type
Protein coding
Short Description
ER-type Ca2+-ATPase 2
Curator Summary
Type IIA (SERCA-type) Ca2+ ATPase, catalyzes the efflux of calcium from the cytoplasm.
Computational Description
ER-type Ca2+-ATPase 2 (ECA2); FUNCTIONS IN: calcium-transporting ATPase activity; INVOLVED IN: calcium ion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting (InterPro:IPR005782), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type cation exchange, alpha subunit (InterPro:IPR006069), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: ER-type Ca2+-ATPase 1 (TAIR:AT1G07810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR