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13-1740-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16685616 [Map]; Strand: c
      • AT3G45480.1 - [+] show detail - RING/U-box protein with C6HC-type zinc finger
        Distance: -1024; Region: intergenic
      • AT3G45490.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (T...
        Distance: 1346; Region: intergenic
    Flanking Genome Sequence: 13-1740-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAG 
    TTCAAGCCTT GTTTCCTAAA AAAAGATATA GCAGATTCCG GACTATCAAT 
    AGCCTGGATG AGAATTGAAG GGAATTCGCA ATTTCGCCAT GATTTTACTT 
    GATTAATTGC AACGCAGGTG ACAAGTTATA ACATCTGAGG AACCTTACAA 
    CNTTACTCTA CGCCGAAGCA GAGTTCGTGT ATCCTCACGA AGCAAAACTA 
    ATGTCACCAT CGGTTTCTTC TAGCACCTTA CATGGCCATG GAGCAAAGAT 
    GTTCTACTTG GTATCTACCA CTACTCTAGT GACGATGATG GCCGATTTCA 
    TAGTTTTTAT TATTTACACG CACCACTTTT TCCCTTGAGA TGATGGAAAT 
    AACATTCTGC TGTTTTTATA CTTATGATGT CACAGAGCGC CGATGATGAT 
    TCGTAGATGA AAATTGAGGT TCAGTTAGGC CGCGAAATAA GCAAAGAGAT 
    ATTTGAAGGA CACTAAACAC ACCAATTCAA TGATTGGATA ATCAATCTCT 
    CACAGAATTA GAGACTCTCT CTATATATCA GTGTTTTCAC GCCCGACCCG 
    AACCGTCCGG TCCAACCGGT TGAACTGTGA CCCAAACACT TTTCCGGTTT 
    GGGTTGAGTA CTAAAACCCG ACAAGTTCAA AACCGAAAAA AACCCACAAA 
    AACTCACCAT TAACCCGTGA CCCGGTGAAC CGGTTGAACC GGCCNGGTGT 
    GGGTTTTAAA ATATTCTCTT GATTTTGGAA TAAATATGGG ATG

AT3G45480.1

Model type
Protein coding
Short Description
RING/U-box protein with C6HC-type zinc finger
Computational Description
RING/U-box protein with C6HC-type zinc finger; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: IBR domain containing protein (TAIR:AT3G45460.1); Has 2300 Blast hits to 2269 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 900; Fungi - 395; Plants - 659; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G45490.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25370.1); Has 99 Blast hits to 96 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR